ARTADE2 予測遺伝子モデル データベースTAIR_gene_model (on ARTADE2DB) (ver. TAIR9)Genes with tiling-array support (Annotated)
AT3G61620.1http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u326162001000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT4G22285.1 | 0.911655 | ubiquitin thiolesterase/ zinc ion binding | - | - | - | - |
| AT1G72050.2 | 0.904437 | TFIIIA (TRANSCRIPTION FACTOR IIIA) | OMAT1P020710 | - | - | - |
| AT4G37020.1 | 0.9008 | unknown protein | - | - | - | - |
| AT5G23290.1 | 0.898252 | PDF5 (PREFOLDIN 5) | OMAT5P007910 | - | - | - |
| AT2G30280.1 | 0.895864 | unknown protein | OMAT2P106260 | - | - | - |
| AT5G11760.1 | 0.894599 | unknown protein | OMAT5P004030 | - | - | - |
| AT1G60080.1 | 0.883001 | 3' exoribonuclease family domain 1-containing protein | - | - | - | - |
| AT4G34412.1 | 0.881144 | FUNCTIONS IN: molecular_function unknown | OMAT4P110050 | - | - | - |
| AT5G31838.1 | 0.88109 | transposable element gene | - | - | - | - |
| AtsnoR44-1a | 0.880548 | AtsnoR44-1a | OMAT1P106000 | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT3G13520.1 | -0.83203 | AGP12 (ARABINOGALACTAN PROTEIN 12) | OMAT3P004790 | - | - | - |
| AT1G51402.1 | -0.815241 | unknown protein | OMAT1P014180 | - | OMAT1P112450 | - |
| AT3G02470.1 | -0.776365 | SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE) | OMAT3P000660 | - | OMAT3P100630 | - |
| AT3G02468.1 | -0.766665 | CPuORF9 (Conserved peptide upstream open reading frame 9) | OMAT3P000660 | - | OMAT3P100630 | - |
| AT5G02380.1 | -0.764701 | MT2B (METALLOTHIONEIN 2B) | OMAT5P100430 | - | - | - |
| AT4G20260.4 | -0.724907 | DREPP plasma membrane polypeptide family protein | OMAT4P006170 | - | - | - |
| AT2G07715.1 | -0.715423 | ribosomal protein L2, putative | - | - | - | - |
| AT1G07600.1 | -0.714707 | MT1A (METALLOTHIONEIN 1A) | OMAT1P102300 | - | - | - |
| AT1G74640.1 | -0.712527 | unknown protein | OMAT1P021720 | - | - | - |
| AT5G57350.1 | -0.699573 | AHA3 | OMAT5P115010 | - | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 2.52e-21 | :20 terms with high significance | |
| 2.52e-21 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 5 | GO:0006396 | RNA processing | 14/200 | 6.33 | 7.91e-09 | 0 | yes |
| B | 4 | GO:0042254 | ribosome biogenesis | 10/200 | 7.81 | 7.75e-08 | - | no |
| B | 3 | GO:0022613 | ribonucleoprotein complex biogenesis | 10/200 | 7.56 | 1.08e-07 | - | no |
| B | 4 | GO:0010467 | gene expression | 40/200 | 1.96 | 1.03e-05 | 1.77E-15 | yes |
| B | 5 | GO:0016070 | RNA metabolic process | 22/200 | 2.59 | 1.56e-05 | - | yes |
| B | 4 | GO:0044260 | cellular macromolecule metabolic process | 57/200 | 1.62 | 4.91e-05 | - | yes |
| B | 3 | GO:0043170 | macromolecule metabolic process | 59/200 | 1.52 | 1.94e-04 | - | yes |
| B | 5 | GO:0090304 | nucleic acid metabolic process | 29/200 | 1.93 | 2.23e-04 | - | yes |
| B | 4 | GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 31/200 | 1.84 | 3.37e-04 | - | yes |
| B | 4 | GO:0034641 | cellular nitrogen compound metabolic process | 33/200 | 1.70 | 9.30e-04 | - | yes |
| B | 3 | GO:0006807 | nitrogen compound metabolic process | 33/200 | 1.66 | 1.30e-03 | - | yes |
| B | 3 | GO:0044237 | cellular metabolic process | 64/200 | 1.35 | 2.60e-03 | - | yes |
| B | 3 | GO:0044238 | primary metabolic process | 65/200 | 1.31 | 5.38e-03 | - | yes |
| B | 5 | GO:0006412 | translation | 14/200 | 1.93 | 6.51e-03 | - | no |
| C | 5 | GO:0031981 | nuclear lumen | 22/200 | 9.10 | 5.17e-16 | - | no |
| C | 4 | GO:0070013 | intracellular organelle lumen | 23/200 | 8.48 | 5.85e-16 | - | no |
| C | 3 | GO:0043233 | organelle lumen | 23/200 | 8.46 | 6.15e-16 | - | no |
| C | 5 | GO:0005730 | nucleolus | 18/200 | 10.50 | 1.30e-14 | - | no |
| C | 3 | GO:0005622 | intracellular | 101/200 | 1.90 | 1.70e-13 | - | no |
| C | 4 | GO:0044428 | nuclear part | 22/200 | 6.61 | 4.34e-13 | - | no |
| C | 3 | GO:0044424 | intracellular part | 96/200 | 1.88 | 1.92e-12 | - | no |
| C | 5 | GO:0005634 | nucleus | 46/200 | 2.94 | 6.25e-12 | 5.36E-16 | no |
| C | 3 | GO:0043229 | intracellular organelle | 89/200 | 1.93 | 6.52e-12 | - | no |
| C | 3 | GO:0043228 | non-membrane-bounded organelle | 26/200 | 4.36 | 6.55e-11 | - | no |
| C | 4 | GO:0043232 | intracellular non-membrane-bounded organelle | 26/200 | 4.36 | 6.55e-11 | - | no |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 83/200 | 1.89 | 1.60e-10 | - | no |
| C | 3 | GO:0043227 | membrane-bounded organelle | 83/200 | 1.89 | 1.61e-10 | - | no |
| C | 5 | GO:0044451 | nucleoplasm part | 10/200 | 13.30 | 2.88e-10 | - | no |
| C | 5 | GO:0005654 | nucleoplasm | 10/200 | 12.50 | 5.62e-10 | - | no |
| C | 3 | GO:0030529 | ribonucleoprotein complex | 17/200 | 4.87 | 1.70e-08 | - | no |
| C | 3 | GO:0044446 | intracellular organelle part | 36/200 | 2.51 | 9.20e-08 | - | no |
| C | 3 | GO:0044422 | organelle part | 36/200 | 2.51 | 9.39e-08 | - | no |
| C | 5 | GO:0005739 | mitochondrion | 22/200 | 3.44 | 1.32e-07 | - | no |
| C | 3 | GO:0043234 | protein complex | 18/200 | 2.75 | 3.47e-05 | 5.61E-16 | no |
| C | 4 | GO:0005737 | cytoplasm | 60/200 | 1.60 | 3.89e-05 | 2.55E-16 | no |
| C | 4 | GO:0044444 | cytoplasmic part | 54/200 | 1.56 | 2.32e-04 | - | no |
| C | 3 | GO:0044464 | cell part | 110/200 | 1.20 | 3.47e-03 | - | no |
| M | 3 | GO:0003676 | nucleic acid binding | 46/200 | 1.94 | 3.01e-06 | - | yes |
| M | 4 | GO:0003723 | RNA binding | 20/200 | 2.88 | 7.12e-06 | - | yes |
| M | 3 | GO:0000166 | nucleotide binding | 22/200 | 1.67 | 6.83e-03 | - | no |
| PS | 4 | PO:0000037 | shoot apex | 162/200 | 1.88 | 4.32e-29 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 156/200 | 1.92 | 7.37e-28 | - | yes |
| PS | 5 | PO:0020038 | petiole | 148/200 | 1.94 | 9.12e-26 | - | yes |
| PS | 3 | PO:0009005 | root | 159/200 | 1.77 | 2.55e-24 | - | yes |
| PS | 4 | PO:0009025 | leaf | 160/200 | 1.74 | 8.41e-24 | - | yes |
| PS | 4 | PO:0009047 | stem | 152/200 | 1.80 | 4.23e-23 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 144/200 | 1.86 | 2.04e-22 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 149/200 | 1.81 | 2.34e-22 | - | yes |
| PS | 3 | PO:0009031 | sepal | 157/200 | 1.70 | 1.48e-21 | - | yes |
| PS | 5 | PO:0008037 | seedling | 153/200 | 1.73 | 2.16e-21 | - | yes |
| PS | 4 | PO:0009009 | embryo | 160/200 | 1.66 | 4.63e-21 | - | yes |
| PS | 3 | PO:0009032 | petal | 151/200 | 1.72 | 1.64e-20 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 157/200 | 1.66 | 1.87e-20 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 157/200 | 1.66 | 1.87e-20 | - | yes |
| PS | 3 | PO:0009010 | seed | 160/200 | 1.64 | 2.20e-20 | - | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 141/200 | 1.81 | 2.56e-20 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 147/200 | 1.75 | 2.86e-20 | - | yes |
| PS | 4 | PO:0009001 | fruit | 160/200 | 1.63 | 4.22e-20 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 160/200 | 1.63 | 4.22e-20 | - | yes |
| PS | 3 | PO:0009013 | meristem | 143/200 | 1.78 | 6.22e-20 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 151/200 | 1.68 | 3.50e-19 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 134/200 | 1.83 | 8.25e-19 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 161/200 | 1.57 | 1.82e-18 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 143/200 | 1.70 | 6.68e-18 | - | yes |
| PS | 3 | PO:0009006 | shoot | 163/200 | 1.50 | 1.29e-16 | - | yes |
| PS | 5 | PO:0009046 | flower | 159/200 | 1.53 | 1.57e-16 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 159/200 | 1.52 | 3.18e-16 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 135/200 | 1.63 | 2.80e-14 | - | yes |
| PS | 3 | PO:0000084 | sperm cell | 52/200 | 1.60 | 1.45e-04 | - | no |
| PS | 3 | PO:0020097 | generative cell | 52/200 | 1.60 | 1.45e-04 | - | no |
| PG | 5 | PO:0001081 | F mature embryo stage | 157/200 | 1.97 | 7.66e-30 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 159/200 | 1.93 | 2.36e-29 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 158/200 | 1.90 | 3.65e-28 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 153/200 | 1.86 | 3.10e-25 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 160/200 | 1.78 | 5.60e-25 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 160/200 | 1.77 | 9.85e-25 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 145/200 | 1.89 | 2.90e-23 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 145/200 | 1.88 | 3.09e-23 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 149/200 | 1.77 | 2.46e-21 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 149/200 | 1.77 | 2.52e-21 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 149/200 | 1.76 | 5.53e-21 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 164/200 | 1.61 | 9.92e-21 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 159/200 | 1.61 | 2.86e-19 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 164/200 | 1.57 | 3.51e-19 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 156/200 | 1.61 | 2.17e-18 | - | yes |
| PG | 5 | PO:0007605 | androecium developmental stages | 41/200 | 1.40 | 9.30e-03 | - | no |
| KW | 0 | nucleolus | - | 17/200 | 12.51 | 3.02e-15 | - | no |
| KW | 0 | complex | - | 30/200 | 3.54 | 4.36e-10 | 1.40E-15 | no |
| KW | 0 | eukaryotic | - | 13/200 | 6.61 | 1.37e-08 | 1.12E-16 | no |
| KW | 0 | processing | - | 11/200 | 7.75 | 2.33e-08 | 0 | yes |
| KW | 0 | nucleus | - | 34/200 | 2.64 | 6.54e-08 | 5.36E-16 | no |
| KW | 0 | nucleotide | - | 22/200 | 3.46 | 1.19e-07 | - | no |
| KW | 0 | ribosomal | - | 14/200 | 4.64 | 4.46e-07 | 0 | no |
| KW | 0 | mitochondrion | - | 19/200 | 3.46 | 7.33e-07 | - | no |
| KW | 0 | nucleic | - | 20/200 | 3.06 | 2.85e-06 | - | no |
| KW | 0 | nuclear | - | 13/200 | 4.23 | 2.99e-06 | 9.36E-16 | no |
| KW | 0 | translation | - | 16/200 | 3.23 | 1.14e-05 | - | no |
| KW | 0 | ribosome | - | 11/200 | 4.17 | 1.58e-05 | - | no |
| KW | 0 | subunit | - | 20/200 | 2.73 | 1.62e-05 | 4.21E-16 | no |
| KW | 0 | ubiquitin | - | 14/200 | 3.12 | 5.15e-05 | - | no |
| KW | 0 | motif | - | 14/200 | 2.88 | 1.23e-04 | - | no |
| KW | 0 | constituent | - | 10/200 | 3.57 | 1.32e-04 | - | no |
| KW | 0 | ligase | - | 12/200 | 3.07 | 1.68e-04 | - | no |
| KW | 0 | intracellular | - | 14/200 | 2.71 | 2.34e-04 | - | no |
| KW | 0 | cellular_component | - | 70/200 | 1.44 | 2.69e-04 | - | yes |
| KW | 0 | structural | - | 10/200 | 2.85 | 8.66e-04 | - | no |
| KW | 0 | small | - | 10/200 | 2.48 | 2.59e-03 | 1.51E-15 | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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