OMAT3P115270http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u301152700000i
Other supporting information
| Gene Model | |
 | |
| Correlation Plot | |
 | |
Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT4P007870 | 0.922758 | - | AT4G25210 | transcription regulator | - | - |
| OMAT2P010410 | 0.919962 | - | AT2G39420 | esterase/lipase/thioesterase family protein | - | - |
| OMAT4P108535 | 0.913399 | - | AT4G30370 | zinc finger (C3HC4-type RING finger) family protein | - | - |
| OMAT5P019270 | 0.908931 | - | AT5G63010 | WD-40 repeat family protein | - | - |
| OMAT1P119040 | 0.908332 | - | AT1G74270 | 60S ribosomal protein L35a (RPL35aC) | - | - |
| OMAT3P106340 | 0.906958 | - | AT3G19130 | ATRBP47B (RNA-binding protein 47B) | - | - |
| OMAT1P011355 | 0.904988 | - | AtsnoR14-2,AtsnoR15,AT1G32385 | [AtsnoR14-2]AtsnoR14-2, [AtsnoR15]AtsnoR15, [AT1G32385]snoRNA | - | - |
| OMAT1P013065 | 0.904504 | - | - | - | - | - |
| OMAT1P012940 | 0.902379 | - | AT1G47278 | unknown protein | - | - |
| OMAT5P014150 | 0.902247 | - | AT5G49510 | PDF3 (PREFOLDIN 3) | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P120450 | -0.68343 | - | AT1G78140 | methyltransferase-related | - | - |
| OMAT2P004520 | -0.67238 | - | AT2G22990 | SNG1 (SINAPOYLGLUCOSE 1) | - | - |
| OMAT5P108800 | -0.648526 | - | AT5G36160 | aminotransferase-related | - | - |
| OMAT2P108545 | -0.644975 | - | AT2G36895 | unknown protein | - | - |
| OMAT3P015090 | -0.637301 | - | - | - | AT3G54890 | LHCA1 |
| OMAT3P000660 | -0.635216 | - | AT3G02470,AT3G02468 | [AT3G02470]SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE), [AT3G02468]CPuORF9 (Conserved peptide upstream open reading frame 9) | - | - |
| OMAT2P007330 | -0.626775 | - | AT2G30950 | VAR2 (VARIEGATED 2) | - | - |
| OMAT3P107180 | -0.626034 | - | AT3G21670 | nitrate transporter (NTP3) | - | - |
| OMAT1P112190 | -0.624341 | - | AT1G50020 | unknown protein | - | - |
| OMAT5P115010 | -0.621525 | - | AT5G57350 | AHA3 | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.73e-07 | :20 terms with high significance | |
| 1.73e-07 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 5 | GO:0006364 | rRNA processing | 17/204 | 26.65 | 2.95e-21 | 3.68E-18 | no |
| B | 4 | GO:0042254 | ribosome biogenesis | 21/204 | 16.07 | 1.18e-20 | - | no |
| B | 3 | GO:0022613 | ribonucleoprotein complex biogenesis | 21/204 | 15.56 | 2.41e-20 | - | no |
| B | 5 | GO:0009451 | RNA modification | 17/204 | 21.99 | 1.11e-19 | - | no |
| B | 5 | GO:0006396 | RNA processing | 23/204 | 10.19 | 9.37e-18 | 0 | yes |
| B | 5 | GO:0016070 | RNA metabolic process | 27/204 | 3.11 | 4.98e-08 | - | yes |
| B | 4 | GO:0010467 | gene expression | 38/204 | 1.83 | 8.46e-05 | 1.77E-15 | yes |
| B | 5 | GO:0090304 | nucleic acid metabolic process | 29/204 | 1.89 | 3.16e-04 | - | yes |
| B | 4 | GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 29/204 | 1.68 | 2.01e-03 | - | yes |
| B | 5 | GO:0006412 | translation | 14/204 | 1.89 | 7.76e-03 | - | no |
| B | 4 | GO:0034641 | cellular nitrogen compound metabolic process | 30/204 | 1.51 | 8.43e-03 | - | yes |
| C | 3 | GO:0030529 | ribonucleoprotein complex | 28/204 | 7.87 | 3.96e-18 | - | no |
| C | 5 | GO:0005730 | nucleolus | 14/204 | 8.01 | 3.20e-10 | - | no |
| C | 4 | GO:0070013 | intracellular organelle lumen | 17/204 | 6.14 | 4.61e-10 | - | no |
| C | 3 | GO:0043233 | organelle lumen | 17/204 | 6.13 | 4.78e-10 | - | no |
| C | 5 | GO:0031981 | nuclear lumen | 16/204 | 6.49 | 5.96e-10 | - | no |
| C | 3 | GO:0043228 | non-membrane-bounded organelle | 23/204 | 3.78 | 1.20e-08 | - | no |
| C | 4 | GO:0043232 | intracellular non-membrane-bounded organelle | 23/204 | 3.78 | 1.20e-08 | - | no |
| C | 4 | GO:0044428 | nuclear part | 16/204 | 4.72 | 6.61e-08 | - | no |
| C | 3 | GO:0005622 | intracellular | 85/204 | 1.57 | 1.05e-06 | - | no |
| C | 3 | GO:0044424 | intracellular part | 81/204 | 1.56 | 2.77e-06 | - | no |
| C | 3 | GO:0044446 | intracellular organelle part | 33/204 | 2.26 | 3.53e-06 | - | no |
| C | 3 | GO:0044422 | organelle part | 33/204 | 2.25 | 3.60e-06 | - | no |
| C | 4 | GO:0005840 | ribosome | 10/204 | 3.83 | 7.15e-05 | - | no |
| C | 5 | GO:0005739 | mitochondrion | 16/204 | 2.45 | 3.27e-04 | - | no |
| M | 3 | GO:0003735 | structural constituent of ribosome | 10/204 | 4.53 | 1.55e-05 | - | no |
| PS | 5 | PO:0020038 | petiole | 113/204 | 1.46 | 1.73e-07 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 116/204 | 1.40 | 1.04e-06 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 119/204 | 1.36 | 3.85e-06 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 107/204 | 1.36 | 2.22e-05 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 112/204 | 1.33 | 2.94e-05 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 113/204 | 1.32 | 3.94e-05 | - | yes |
| PS | 3 | PO:0009005 | root | 119/204 | 1.30 | 4.80e-05 | - | yes |
| PS | 4 | PO:0009025 | leaf | 119/204 | 1.27 | 1.49e-04 | - | yes |
| PS | 4 | PO:0009047 | stem | 111/204 | 1.29 | 1.64e-04 | - | yes |
| PS | 3 | PO:0009032 | petal | 114/204 | 1.28 | 2.03e-04 | - | yes |
| PS | 5 | PO:0008037 | seedling | 113/204 | 1.25 | 4.76e-04 | - | yes |
| PS | 3 | PO:0009031 | sepal | 117/204 | 1.24 | 5.29e-04 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 108/204 | 1.26 | 6.20e-04 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 114/204 | 1.24 | 7.04e-04 | - | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 100/204 | 1.26 | 1.22e-03 | - | yes |
| PS | 3 | PO:0009013 | meristem | 102/204 | 1.24 | 1.77e-03 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 116/204 | 1.21 | 2.15e-03 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 116/204 | 1.21 | 2.15e-03 | - | yes |
| PS | 4 | PO:0009009 | embryo | 118/204 | 1.20 | 2.52e-03 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 93/204 | 1.24 | 3.69e-03 | - | yes |
| PS | 3 | PO:0009010 | seed | 118/204 | 1.18 | 4.25e-03 | - | yes |
| PS | 4 | PO:0009001 | fruit | 118/204 | 1.18 | 5.26e-03 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 118/204 | 1.18 | 5.26e-03 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 121/204 | 1.16 | 8.65e-03 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 117/204 | 1.44 | 1.32e-07 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 117/204 | 1.39 | 1.12e-06 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 117/204 | 1.38 | 1.77e-06 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 116/204 | 1.39 | 1.78e-06 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 106/204 | 1.35 | 3.27e-05 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 106/204 | 1.35 | 3.36e-05 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 113/204 | 1.32 | 4.63e-05 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 113/204 | 1.32 | 4.68e-05 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 113/204 | 1.31 | 6.62e-05 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 117/204 | 1.27 | 1.54e-04 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 117/204 | 1.27 | 1.91e-04 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 117/204 | 1.18 | 4.48e-03 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 118/204 | 1.17 | 6.14e-03 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 120/204 | 1.15 | 9.80e-03 | - | yes |
| KW | 0 | nucleolus | - | 14/204 | 10.10 | 1.22e-11 | - | no |
| KW | 0 | ribosomal | - | 17/204 | 5.52 | 2.50e-09 | 0 | no |
| KW | 0 | ribosome | - | 14/204 | 5.20 | 1.04e-07 | - | no |
| KW | 0 | eukaryotic | - | 12/204 | 5.98 | 1.36e-07 | 1.12E-16 | no |
| KW | 0 | translation | - | 17/204 | 3.36 | 3.77e-06 | - | no |
| KW | 0 | constituent | - | 11/204 | 3.85 | 3.44e-05 | - | no |
| KW | 0 | structural | - | 12/204 | 3.36 | 7.09e-05 | - | no |
| KW | 0 | intracellular | - | 12/204 | 2.28 | 2.61e-03 | - | no |
| KW | 0 | subunit | - | 15/204 | 2.01 | 3.64e-03 | 4.21E-16 | no |
| KW | 0 | mitochondrion | - | 12/204 | 2.14 | 4.35e-03 | - | no |
| KW | 0 | motif | - | 11/204 | 2.22 | 4.41e-03 | - | no |
| KW | 0 | nucleotide | - | 13/204 | 2.00 | 5.96e-03 | - | no |
| KW | 0 | complex | - | 16/204 | 1.85 | 6.28e-03 | 1.40E-15 | no |
| KW | 0 | nucleic | - | 13/204 | 1.95 | 7.48e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
Top Page
