ARTADE2 予測遺伝子モデル データベースTAIR_gene_model (on ARTADE2DB) (ver. TAIR9)Genes with tiling-array support (Annotated)
AT3G61620.2http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u326162002000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AtsnoR44-1a | 0.93175 | AtsnoR44-1a | OMAT1P106000 | - | - | - |
| AT1G02140.1 | 0.931069 | MAGO (MAGO NASHI) | OMAT1P100340 | - | - | - |
| AT3G22320.1 | 0.930491 | NRPB5 | OMAT3P107420 | - | - | - |
| AT1G01940.1 | 0.9292 | peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein | - | - | - | - |
| AT1G08845.2 | 0.92789 | structural constituent of ribosome | OMAT1P002970 | - | - | - |
| AT4G35490.1 | 0.926389 | MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11) | OMAT4P012200 | - | - | - |
| AtsnoR14-2 | 0.9213 | AtsnoR14-2 | OMAT1P011355 | - | - | - |
| AT1G49350.1 | 0.920389 | pfkB-type carbohydrate kinase family protein | OMAT1P013550 | - | - | - |
| AT5G27990.1 | 0.919551 | unknown protein | OMAT5P009410 | - | - | - |
| AT3G18910.1 | 0.917448 | F-box family protein | OMAT3P007160 | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT3G02470.1 | -0.805676 | SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE) | OMAT3P000660 | - | OMAT3P100630 | - |
| AT3G02468.1 | -0.803043 | CPuORF9 (Conserved peptide upstream open reading frame 9) | OMAT3P000660 | - | OMAT3P100630 | - |
| AT3G56240.1 | -0.777339 | CCH (COPPER CHAPERONE) | OMAT3P113750 | - | OMAT3P015670 | - |
| AT5G57350.1 | -0.763678 | AHA3 | OMAT5P115010 | - | - | - |
| AT5G02380.1 | -0.763231 | MT2B (METALLOTHIONEIN 2B) | OMAT5P100430 | - | - | - |
| AT1G29930.1 | -0.756611 | CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1) | OMAT1P010480 | - | - | - |
| AT2G34420.1 | -0.746407 | LHB1B2 | OMAT2P107590 | - | - | - |
| AT3G13520.1 | -0.745433 | AGP12 (ARABINOGALACTAN PROTEIN 12) | OMAT3P004790 | - | - | - |
| AT2G07715.1 | -0.744406 | ribosomal protein L2, putative | - | - | - | - |
| AT1G74640.1 | -0.739881 | unknown protein | OMAT1P021720 | - | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 2.14e-21 | :20 terms with high significance | |
| 2.14e-21 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 5 | GO:0006396 | RNA processing | 19/200 | 8.58 | 1.20e-13 | 0 | yes |
| B | 4 | GO:0042254 | ribosome biogenesis | 13/200 | 10.15 | 5.27e-11 | - | no |
| B | 3 | GO:0022613 | ribonucleoprotein complex biogenesis | 13/200 | 9.83 | 8.11e-11 | - | no |
| B | 5 | GO:0016070 | RNA metabolic process | 26/200 | 3.06 | 1.21e-07 | - | yes |
| B | 4 | GO:0010467 | gene expression | 43/200 | 2.11 | 6.87e-07 | 1.77E-15 | yes |
| B | 5 | GO:0090304 | nucleic acid metabolic process | 34/200 | 2.26 | 2.33e-06 | - | yes |
| B | 4 | GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 35/200 | 2.07 | 1.17e-05 | - | yes |
| B | 4 | GO:0034641 | cellular nitrogen compound metabolic process | 37/200 | 1.90 | 4.54e-05 | - | yes |
| B | 3 | GO:0006807 | nitrogen compound metabolic process | 37/200 | 1.86 | 6.90e-05 | - | yes |
| B | 4 | GO:0044260 | cellular macromolecule metabolic process | 54/200 | 1.53 | 3.40e-04 | - | yes |
| B | 3 | GO:0043170 | macromolecule metabolic process | 54/200 | 1.40 | 3.16e-03 | - | yes |
| B | 3 | GO:0044237 | cellular metabolic process | 63/200 | 1.33 | 4.17e-03 | - | yes |
| C | 4 | GO:0070013 | intracellular organelle lumen | 21/200 | 7.74 | 6.00e-14 | - | no |
| C | 3 | GO:0043233 | organelle lumen | 21/200 | 7.73 | 6.28e-14 | - | no |
| C | 5 | GO:0031981 | nuclear lumen | 19/200 | 7.86 | 6.14e-13 | - | no |
| C | 3 | GO:0030529 | ribonucleoprotein complex | 20/200 | 5.73 | 6.31e-11 | - | no |
| C | 4 | GO:0044428 | nuclear part | 19/200 | 5.71 | 1.88e-10 | - | no |
| C | 5 | GO:0005730 | nucleolus | 14/200 | 8.17 | 2.42e-10 | - | no |
| C | 3 | GO:0043228 | non-membrane-bounded organelle | 23/200 | 3.86 | 8.12e-09 | - | no |
| C | 4 | GO:0043232 | intracellular non-membrane-bounded organelle | 23/200 | 3.86 | 8.12e-09 | - | no |
| C | 3 | GO:0005622 | intracellular | 89/200 | 1.67 | 1.59e-08 | - | no |
| C | 3 | GO:0044424 | intracellular part | 86/200 | 1.69 | 2.16e-08 | - | no |
| C | 3 | GO:0044446 | intracellular organelle part | 35/200 | 2.44 | 2.76e-07 | - | no |
| C | 3 | GO:0044422 | organelle part | 35/200 | 2.44 | 2.81e-07 | - | no |
| C | 3 | GO:0043229 | intracellular organelle | 77/200 | 1.67 | 3.26e-07 | - | no |
| C | 5 | GO:0005634 | nucleus | 36/200 | 2.30 | 7.76e-07 | 5.36E-16 | no |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 70/200 | 1.59 | 8.09e-06 | - | no |
| C | 3 | GO:0043227 | membrane-bounded organelle | 70/200 | 1.59 | 8.13e-06 | - | no |
| C | 4 | GO:0005840 | ribosome | 10/200 | 3.90 | 5.98e-05 | - | no |
| C | 3 | GO:0043234 | protein complex | 17/200 | 2.60 | 1.11e-04 | 5.61E-16 | no |
| C | 5 | GO:0005739 | mitochondrion | 16/200 | 2.50 | 2.60e-04 | - | no |
| C | 4 | GO:0005737 | cytoplasm | 55/200 | 1.47 | 8.61e-04 | 2.55E-16 | no |
| C | 4 | GO:0044444 | cytoplasmic part | 50/200 | 1.44 | 2.36e-03 | - | no |
| M | 4 | GO:0003723 | RNA binding | 20/200 | 2.88 | 7.12e-06 | - | yes |
| M | 3 | GO:0003676 | nucleic acid binding | 41/200 | 1.73 | 1.57e-04 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 163/200 | 1.89 | 7.25e-30 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 154/200 | 1.89 | 2.01e-26 | - | yes |
| PS | 5 | PO:0020038 | petiole | 148/200 | 1.94 | 9.12e-26 | - | yes |
| PS | 3 | PO:0009005 | root | 160/200 | 1.78 | 5.09e-25 | - | yes |
| PS | 4 | PO:0009047 | stem | 153/200 | 1.81 | 9.27e-24 | - | yes |
| PS | 4 | PO:0009025 | leaf | 159/200 | 1.73 | 4.04e-23 | - | yes |
| PS | 5 | PO:0008037 | seedling | 155/200 | 1.76 | 1.12e-22 | - | yes |
| PS | 4 | PO:0009009 | embryo | 162/200 | 1.68 | 2.20e-22 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 148/200 | 1.80 | 9.97e-22 | - | yes |
| PS | 3 | PO:0009010 | seed | 162/200 | 1.66 | 1.10e-21 | - | yes |
| PS | 4 | PO:0009001 | fruit | 162/200 | 1.65 | 2.14e-21 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 162/200 | 1.65 | 2.14e-21 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 142/200 | 1.84 | 3.48e-21 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 148/200 | 1.76 | 7.09e-21 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 157/200 | 1.66 | 1.87e-20 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 157/200 | 1.66 | 1.87e-20 | - | yes |
| PS | 3 | PO:0009031 | sepal | 155/200 | 1.68 | 2.73e-20 | - | yes |
| PS | 3 | PO:0009032 | petal | 150/200 | 1.71 | 6.64e-20 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 134/200 | 1.83 | 8.25e-19 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 161/200 | 1.57 | 1.82e-18 | - | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 137/200 | 1.76 | 4.89e-18 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 149/200 | 1.66 | 5.06e-18 | - | yes |
| PS | 3 | PO:0009006 | shoot | 165/200 | 1.52 | 8.08e-18 | - | yes |
| PS | 5 | PO:0009046 | flower | 161/200 | 1.55 | 1.07e-17 | - | yes |
| PS | 3 | PO:0009013 | meristem | 139/200 | 1.73 | 1.15e-17 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 161/200 | 1.54 | 2.21e-17 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 138/200 | 1.64 | 2.97e-15 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 122/200 | 1.47 | 8.34e-09 | - | yes |
| PS | 3 | PO:0000084 | sperm cell | 54/200 | 1.66 | 3.70e-05 | - | no |
| PS | 3 | PO:0020097 | generative cell | 54/200 | 1.66 | 3.70e-05 | - | no |
| PG | 5 | PO:0001081 | F mature embryo stage | 159/200 | 2.00 | 2.19e-31 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 160/200 | 1.94 | 4.04e-30 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 160/200 | 1.93 | 1.13e-29 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 161/200 | 1.79 | 1.09e-25 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 161/200 | 1.78 | 1.93e-25 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 153/200 | 1.86 | 3.10e-25 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 143/200 | 1.86 | 5.28e-22 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 143/200 | 1.86 | 5.60e-22 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 164/200 | 1.61 | 9.92e-21 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 161/200 | 1.63 | 1.57e-20 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 147/200 | 1.75 | 4.07e-20 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 147/200 | 1.75 | 4.17e-20 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 147/200 | 1.74 | 8.92e-20 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 164/200 | 1.57 | 3.51e-19 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 155/200 | 1.60 | 8.37e-18 | - | yes |
| KW | 0 | processing | - | 16/200 | 11.27 | 9.54e-14 | 0 | yes |
| KW | 0 | complex | - | 32/200 | 3.78 | 2.17e-11 | 1.40E-15 | no |
| KW | 0 | nucleolus | - | 13/200 | 9.56 | 1.16e-10 | - | no |
| KW | 0 | eukaryotic | - | 14/200 | 7.12 | 1.61e-09 | 1.12E-16 | no |
| KW | 0 | nucleotide | - | 19/200 | 2.99 | 6.85e-06 | - | no |
| KW | 0 | cellular_component | - | 75/200 | 1.54 | 1.21e-05 | - | yes |
| KW | 0 | ribosomal | - | 12/200 | 3.97 | 1.24e-05 | 0 | no |
| KW | 0 | ribosome | - | 11/200 | 4.17 | 1.58e-05 | - | no |
| KW | 0 | subunit | - | 20/200 | 2.73 | 1.62e-05 | 4.21E-16 | no |
| KW | 0 | nuclear | - | 11/200 | 3.58 | 6.87e-05 | 9.36E-16 | no |
| KW | 0 | motif | - | 14/200 | 2.88 | 1.23e-04 | - | no |
| KW | 0 | molecular_function | - | 70/200 | 1.39 | 7.87e-04 | - | no |
| KW | 0 | nucleus | - | 24/200 | 1.86 | 1.18e-03 | 5.36E-16 | no |
| KW | 0 | biological_process | - | 79/200 | 1.32 | 1.41e-03 | - | no |
| KW | 0 | translation | - | 12/200 | 2.42 | 1.54e-03 | - | no |
| KW | 0 | ubiquitin | - | 11/200 | 2.45 | 2.00e-03 | - | no |
| KW | 0 | nucleic | - | 14/200 | 2.14 | 2.52e-03 | - | no |
| KW | 0 | alpha | - | 15/200 | 2.06 | 2.86e-03 | - | no |
| KW | 0 | mitochondrion | - | 12/200 | 2.19 | 3.68e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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