AT5G14580

http://metadb.riken.jp/db/SciNetS_rib102i/crib102u0rib102u50000014580i

AT5G14580

TAIR10 Locus

status_type

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u5i

description

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u13i

• polyribonucleotide nucleotidyltransferase, putative; FUNCTIONS IN: polyribonucleotide nucleotidyltransferase activity, 3'-5'-exoribonuclease activity, RNA binding, nucleic acid binding; INVOLVED IN: mRNA catabolic process, RNA processing; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type (InterPro:IPR015848), K Homology (InterPro:IPR004087), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Polyribonucleotide nucleotidyltransferase (InterPro:IPR012162); BEST Arabidopsis thaliana protein match is: polyribonucleotide nucleotidyltransferase, putative (TAIR:AT3G03710.1); Has 30004 Blast hits to 26962 proteins in 2901 species: Archae - 317; Bacteria - 19794; Metazoa - 489; Fungi - 141; Plants - 452; Viruses - 0; Other Eukaryotes - 8811 (source: NCBI BLink).

label

http://www.w3.org/2000/01/rdf-schema#label

• AT5G14580

attributionURL

http://creativecommons.org/ns#attributionURL

• http://arabidopsis.org/servlets/TairObject?type=locus&name=AT5G14580

locus region

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u3i

• Chr5:4697240-4703084 -
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u2rib102u24929i

gene type

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u17i

• protein_coding
  http://metadb.riken.jp/db/SciNetS_ria253i/cria253u10i

species

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u18i

• Arabidopsis thaliana
  http://metadb.riken.jp/db/SciNetS_rib166i/crib166u26rib166u3702i

seeAlso

http://www.w3.org/2000/01/rdf-schema#seeAlso

• http://database.riken.jp/sw/item/crib102u0rib102u50000014580i

synonym

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u14i

relationship

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u6i

TAIR10 Gene Model

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u2i

• AT5G14580.1
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u1rib102u50000145801i

RAFL cDNA

http://metadb.riken.jp/db/SciNetS_ria11i/pria11s1i

• RAFL19-08-E18
  http://metadb.riken.jp/db/SciNetS_ria11i/cria11s1ria11u15420i

TAIR_gene_model (on ARTADE2DB) (ver. TAIR9)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• AT5G14580.1
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u521458001000i

Genes with tiling-array support (Annotated)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• AT5G14580.1
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u521458001000i

ARTADE2_Gene (Ver.20100511)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• OMAT5P104160
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u501041600000i

TAIR によるGO注釈

http://metadb.riken.jp/db/SciNetS_ria269i/pria269u1i

• AT5G14580:functions in:RNA binding
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u148127i
• AT5G14580:involved in:transcription factor import into nucleus
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u148129i
• AT5G14580:functions in:nucleic acid binding
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u148131i
• AT5G14580:has:3'-5'-exoribonuclease activity
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u148132i
• AT5G14580:located in:mitochondrion
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u148130i
• AT5G14580:involved in:mitochondrial RNA catabolic process
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u148128i
• AT5G14580:involved in:mitochondrial RNA processing
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u148126i
• AT5G14580:has:polyribonucleotide nucleotidyltransferase activity
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u148125i

TAIRによるPO注釈（生育ステージ）

http://metadb.riken.jp/db/SciNetS_ria270i/pria270u1i

• AT5G14580:expressed during:4 anthesis
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u173293i
• AT5G14580:expressed during:F mature embryo stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u38211i
• AT5G14580:expressed during:LP.04 four leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u128511i
• AT5G14580:expressed during:petal differentiation and expansion stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u157033i
• AT5G14580:expressed during:D bilateral stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u65570i
• AT5G14580:expressed during:E expanded cotyledon stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u24767i
• AT5G14580:expressed during:C globular stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u51809i

TAIRによるPO注釈（器官名）

http://metadb.riken.jp/db/SciNetS_ria273i/pria273u1i

• AT5G14580:expressed in:shoot apex
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u28584i
• AT5G14580:expressed in:collective leaf structure
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u292353i
• AT5G14580:expressed in:embryo
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u95901i
• AT5G14580:expressed in:stamen
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u137939i
• AT5G14580:expressed in:sepal
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u166993i
• AT5G14580:expressed in:flower
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u197643i
• AT5G14580:expressed in:vascular leaf
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u124026i
• AT5G14580:expressed in:petiole
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u250226i
• AT5G14580:expressed in:shoot system
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u81565i
• AT5G14580:expressed in:hypocotyl
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u264066i
• AT5G14580:expressed in:seed
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u110015i
• AT5G14580:expressed in:root
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u68565i
• AT5G14580:expressed in:pedicel
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u225417i
• AT5G14580:expressed in:stem
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u211818i
• AT5G14580:expressed in:leaf lamina base
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u54496i
• AT5G14580:expressed in:petal
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u181754i

A.thaliana cDNA

http://metadb.riken.jp/db/SciNetS_ria277i/pria277u2i

• RAFL19-08-E18
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u56879i
• NM_121462
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u36753i

AT_TAIR_gene

http://metadb.riken.jp/db/SciNetS_rib101i/prib101s4i

• AT5G14580.1
  http://metadb.riken.jp/db/SciNetS_rib101i/crib101u0rib101u50000145801i

RIKEN A.thaliana gene family

http://metadb.riken.jp/db/SciNetS_rib123i/prib123s1i

• Cluster6753
  http://metadb.riken.jp/db/SciNetS_rib123i/crib123s1rib123u6753i

Domain Annotation(A.thaliana)

http://metadb.riken.jp/db/SciNetS_rib126i/prib126u1i

• PNPase
  http://metadb.riken.jp/db/SciNetS_rib126i/crib126u1rib126u1983i
• RNase_PH
  http://metadb.riken.jp/db/SciNetS_rib126i/crib126u1rib126u724i
• KH_1
  http://metadb.riken.jp/db/SciNetS_rib126i/crib126u1rib126u997i
• S1
  http://metadb.riken.jp/db/SciNetS_rib126i/crib126u1rib126u463i
• RNase_PH_C
  http://metadb.riken.jp/db/SciNetS_rib126i/crib126u1rib126u1982i

RIKEN Ortholog(A.thaliana and Rice)

http://metadb.riken.jp/db/SciNetS_rib127i/prib127u1i

• At-Os_Ortholog13048
  http://metadb.riken.jp/db/SciNetS_rib127i/crib127u1rib127u13048i