OMAT1P002990http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u100029900000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT2P008200 | 0.943279 | - | AT2G33390 | unknown protein | - | - |
| OMAT4P005090 | 0.933645 | - | AT4G17250 | unknown protein | - | - |
| OMAT1P106350 | 0.929545 | - | AT1G19715 | jacalin lectin family protein | - | - |
| OMAT2P106720 | 0.926064 | - | AT2G31800 | ankyrin protein kinase, putative | - | - |
| OMAT1P016230 | 0.914542 | - | AT1G59620 | CW9 | - | - |
| OMAT5P111190 | 0.90787 | - | AT5G45250 | RPS4 (RESISTANT TO P. SYRINGAE 4) | - | - |
| OMAT1P013640 | 0.896145 | - | AT1G49530 | GGPS6 (geranylgeranyl pyrophosphate synthase 6) | - | - |
| OMAT5P111570 | 0.886153 | - | AT5G46170 | F-box family protein | - | - |
| OMAT3P013520 | 0.884964 | - | AT3G50930 | BCS1 (CYTOCHROME BC1 SYNTHESIS) | - | - |
| OMAT5P113330 | 0.884869 | - | AT5G51690,AT5G51700 | [AT5G51690]ACS12, [AT5G51700]PBS2 (PPHB SUSCEPTIBLE 2) | AT5G51680 | hydroxyproline-rich glycoprotein family protein |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P007140 | -0.718658 | - | AT1G19440 | KCS4 (3-KETOACYL-COA SYNTHASE 4) | - | - |
| OMAT1P009930 | -0.714999 | - | AT1G27950 | LTPG1 (GLYCOSYLPHOSPHATIDYLINOSITOL-ANCHORED LIPID PROTEIN TRANSFER 1) | - | - |
| OMAT2P112460 | -0.706983 | - | AT2G47840 | tic20 protein-related | - | - |
| OMAT4P001410 | -0.693825 | - | AT4G04200 | peptidase | - | - |
| OMAT1P009940 | -0.685201 | - | AT1G27950 | LTPG1 (GLYCOSYLPHOSPHATIDYLINOSITOL-ANCHORED LIPID PROTEIN TRANSFER 1) | - | - |
| OMAT1P101370 | -0.670115 | - | AT1G05150 | calcium-binding EF hand family protein | - | - |
| OMAT4P011980 | -0.645981 | - | AT4G34870 | ROC5 (ROTAMASE CYCLOPHILIN 5) | - | - |
| OMAT4P110170 | -0.637154 | - | - | - | AT4G34750 | auxin-responsive protein, putative / small auxin up RNA (SAUR_E) |
| OMAT2P000960 | -0.634556 | - | AT2G04235 | unknown protein | - | - |
| OMAT4P002630 | -0.6227 | - | AT4G10750 | HpcH/HpaI aldolase family protein | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 4.05e-16 | :20 terms with high significance | |
| 4.05e-16 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0006952 | defense response | 26/200 | 5.71 | 1.35e-13 | - | no |
| B | 4 | GO:0045087 | innate immune response | 16/200 | 9.02 | 3.51e-12 | - | no |
| B | 3 | GO:0006955 | immune response | 16/200 | 8.45 | 9.94e-12 | - | no |
| B | 3 | GO:0008219 | cell death | 14/200 | 9.66 | 2.30e-11 | - | no |
| B | 4 | GO:0012501 | programmed cell death | 13/200 | 10.39 | 3.84e-11 | - | no |
| B | 3 | GO:0006950 | response to stress | 39/200 | 3.14 | 4.02e-11 | - | no |
| B | 3 | GO:0009607 | response to biotic stimulus | 19/200 | 5.26 | 7.96e-10 | - | no |
| B | 3 | GO:0051707 | response to other organism | 18/200 | 5.37 | 1.44e-09 | - | no |
| B | 5 | GO:0006796 | phosphate metabolic process | 24/200 | 3.61 | 1.46e-08 | - | no |
| B | 4 | GO:0006793 | phosphorus metabolic process | 24/200 | 3.61 | 1.48e-08 | - | no |
| B | 5 | GO:0006464 | protein modification process | 30/200 | 2.88 | 5.36e-08 | - | no |
| B | 4 | GO:0043412 | macromolecule modification | 30/200 | 2.64 | 3.52e-07 | - | no |
| B | 4 | GO:0009617 | response to bacterium | 10/200 | 6.47 | 5.09e-07 | - | no |
| B | 4 | GO:0007165 | signal transduction | 13/200 | 4.52 | 1.38e-06 | - | no |
| B | 3 | GO:0023046 | signaling process | 13/200 | 4.01 | 5.51e-06 | - | no |
| B | 3 | GO:0023060 | signal transmission | 13/200 | 4.01 | 5.51e-06 | - | no |
| B | 4 | GO:0010033 | response to organic substance | 19/200 | 2.84 | 1.41e-05 | - | no |
| B | 3 | GO:0050794 | regulation of cellular process | 32/200 | 2.10 | 2.18e-05 | - | no |
| B | 3 | GO:0050789 | regulation of biological process | 34/200 | 1.97 | 4.74e-05 | - | no |
| B | 4 | GO:0044260 | cellular macromolecule metabolic process | 56/200 | 1.59 | 9.59e-05 | - | no |
| B | 3 | GO:0044237 | cellular metabolic process | 70/200 | 1.48 | 9.86e-05 | - | no |
| B | 5 | GO:0044267 | cellular protein metabolic process | 37/200 | 1.81 | 1.23e-04 | - | no |
| B | 3 | GO:0051716 | cellular response to stimulus | 13/200 | 2.94 | 1.59e-04 | - | no |
| B | 3 | GO:0009719 | response to endogenous stimulus | 14/200 | 2.72 | 2.31e-04 | - | no |
| B | 4 | GO:0009725 | response to hormone stimulus | 13/200 | 2.75 | 3.14e-04 | - | no |
| B | 3 | GO:0043170 | macromolecule metabolic process | 58/200 | 1.50 | 3.55e-04 | - | no |
| B | 3 | GO:0042221 | response to chemical stimulus | 23/200 | 2.02 | 4.75e-04 | - | no |
| B | 3 | GO:0009628 | response to abiotic stimulus | 17/200 | 2.29 | 4.97e-04 | - | no |
| B | 3 | GO:0023033 | signaling pathway | 10/200 | 2.96 | 6.43e-04 | - | no |
| B | 4 | GO:0019538 | protein metabolic process | 38/200 | 1.65 | 7.14e-04 | - | no |
| B | 3 | GO:0044238 | primary metabolic process | 68/200 | 1.37 | 1.29e-03 | - | no |
| B | 3 | GO:0007275 | multicellular organismal development | 20/200 | 1.88 | 2.32e-03 | - | no |
| B | 4 | GO:0031323 | regulation of cellular metabolic process | 20/200 | 1.85 | 2.86e-03 | - | no |
| B | 3 | GO:0019222 | regulation of metabolic process | 21/200 | 1.78 | 3.63e-03 | - | no |
| B | 4 | GO:0048513 | organ development | 10/200 | 2.26 | 5.21e-03 | - | no |
| B | 4 | GO:0048731 | system development | 10/200 | 2.26 | 5.26e-03 | - | no |
| B | 4 | GO:0051171 | regulation of nitrogen compound metabolic process | 18/200 | 1.78 | 6.47e-03 | - | no |
| C | 3 | GO:0016020 | membrane | 46/200 | 1.68 | 1.22e-04 | 3.00E-88 | yes |
| C | 5 | GO:0005634 | nucleus | 25/200 | 1.60 | 7.34e-03 | - | no |
| C | 3 | GO:0044464 | cell part | 108/200 | 1.18 | 7.86e-03 | - | yes |
| C | 4 | GO:0031224 | intrinsic to membrane | 11/200 | 2.05 | 8.07e-03 | - | yes |
| M | 5 | GO:0016301 | kinase activity | 31/200 | 3.85 | 2.71e-11 | - | no |
| M | 4 | GO:0016772 | transferase activity, transferring phosphorus-containing groups | 32/200 | 3.49 | 1.72e-10 | - | no |
| M | 3 | GO:0004871 | signal transducer activity | 15/200 | 6.67 | 1.23e-09 | - | no |
| M | 5 | GO:0030554 | adenyl nucleotide binding | 30/200 | 3.32 | 2.11e-09 | - | no |
| M | 4 | GO:0001883 | purine nucleoside binding | 30/200 | 3.32 | 2.11e-09 | - | no |
| M | 3 | GO:0001882 | nucleoside binding | 30/200 | 3.31 | 2.24e-09 | - | no |
| M | 4 | GO:0004872 | receptor activity | 11/200 | 9.38 | 2.75e-09 | - | no |
| M | 3 | GO:0005515 | protein binding | 41/200 | 2.62 | 3.26e-09 | - | no |
| M | 5 | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | 24/200 | 3.87 | 3.84e-09 | - | no |
| M | 5 | GO:0004888 | transmembrane receptor activity | 10/200 | 10.39 | 4.02e-09 | - | no |
| M | 5 | GO:0032555 | purine ribonucleotide binding | 30/200 | 3.06 | 1.41e-08 | - | no |
| M | 4 | GO:0032553 | ribonucleotide binding | 30/200 | 3.06 | 1.41e-08 | - | no |
| M | 3 | GO:0016740 | transferase activity | 40/200 | 2.45 | 3.55e-08 | - | no |
| M | 3 | GO:0000166 | nucleotide binding | 35/200 | 2.65 | 3.65e-08 | - | no |
| M | 4 | GO:0017076 | purine nucleotide binding | 30/200 | 2.89 | 5.02e-08 | - | no |
| M | 4 | GO:0003677 | DNA binding | 23/200 | 1.66 | 6.11e-03 | - | no |
| M | 3 | GO:0003700 | transcription factor activity | 18/200 | 1.78 | 6.28e-03 | - | no |
| PS | 4 | PO:0020030 | cotyledon | 145/200 | 1.97 | 1.41e-25 | - | no |
| PS | 4 | PO:0009047 | stem | 153/200 | 1.81 | 9.27e-24 | - | no |
| PS | 4 | PO:0000230 | inflorescence meristem | 143/200 | 1.84 | 1.61e-21 | - | no |
| PS | 5 | PO:0009028 | microsporophyll | 149/200 | 1.78 | 1.71e-21 | - | no |
| PS | 3 | PO:0009013 | meristem | 145/200 | 1.80 | 3.95e-21 | - | no |
| PS | 5 | PO:0000013 | cauline leaf | 141/200 | 1.83 | 1.39e-20 | - | no |
| PS | 4 | PO:0009026 | sporophyll | 153/200 | 1.70 | 2.17e-20 | - | no |
| PS | 5 | PO:0020039 | leaf lamina | 145/200 | 1.76 | 6.62e-20 | - | no |
| PS | 5 | PO:0020038 | petiole | 138/200 | 1.81 | 1.69e-19 | - | no |
| PS | 5 | PO:0008037 | seedling | 149/200 | 1.69 | 5.80e-19 | - | no |
| PS | 4 | PO:0009025 | leaf | 152/200 | 1.65 | 1.04e-18 | - | no |
| PS | 5 | PO:0008034 | leaf whorl | 151/200 | 1.60 | 6.57e-17 | - | no |
| PS | 4 | PO:0008033 | phyllome whorl | 151/200 | 1.60 | 6.57e-17 | - | no |
| PS | 4 | PO:0009009 | embryo | 151/200 | 1.56 | 9.44e-16 | - | no |
| PS | 3 | PO:0009010 | seed | 151/200 | 1.54 | 3.62e-15 | - | no |
| PS | 3 | PO:0006001 | phyllome | 155/200 | 1.51 | 4.83e-15 | - | no |
| PS | 4 | PO:0009001 | fruit | 151/200 | 1.54 | 6.33e-15 | - | no |
| PS | 3 | PO:0006342 | infructescence | 151/200 | 1.54 | 6.33e-15 | - | no |
| PS | 3 | PO:0009031 | sepal | 144/200 | 1.56 | 3.45e-14 | - | no |
| PS | 5 | PO:0009046 | flower | 154/200 | 1.48 | 7.71e-14 | - | no |
| PS | 4 | PO:0009049 | inflorescence | 154/200 | 1.47 | 1.47e-13 | - | no |
| PS | 5 | PO:0009027 | megasporophyll | 134/200 | 1.60 | 2.55e-13 | - | no |
| PS | 3 | PO:0009006 | shoot | 156/200 | 1.44 | 7.63e-13 | - | no |
| PS | 4 | PO:0000037 | shoot apex | 133/200 | 1.55 | 6.18e-12 | - | no |
| PS | 3 | PO:0009032 | petal | 134/200 | 1.53 | 1.10e-11 | - | no |
| PS | 3 | PO:0020091 | male gametophyte | 128/200 | 1.54 | 3.90e-11 | - | no |
| PS | 3 | PO:0009005 | root | 132/200 | 1.47 | 6.57e-10 | - | no |
| PS | 5 | PO:0009052 | pedicel | 116/200 | 1.43 | 2.53e-07 | - | no |
| PS | 3 | PO:0000084 | sperm cell | 45/200 | 1.39 | 7.87e-03 | - | no |
| PS | 3 | PO:0020097 | generative cell | 45/200 | 1.39 | 7.87e-03 | - | no |
| PG | 5 | PO:0007133 | leaf production | 149/200 | 1.77 | 2.46e-21 | - | no |
| PG | 4 | PO:0007112 | 1 main shoot growth | 149/200 | 1.77 | 2.52e-21 | - | no |
| PG | 3 | PO:0007134 | A vegetative growth | 149/200 | 1.76 | 5.53e-21 | - | no |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 138/200 | 1.79 | 4.86e-19 | - | no |
| PG | 3 | PO:0001050 | leaf development stages | 138/200 | 1.79 | 5.14e-19 | - | no |
| PG | 4 | PO:0007616 | 4 anthesis | 152/200 | 1.57 | 4.05e-16 | - | no |
| PG | 3 | PO:0007615 | flower development stages | 155/200 | 1.48 | 4.95e-14 | - | no |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 151/200 | 1.48 | 2.63e-13 | - | no |
| PG | 5 | PO:0007604 | corolla developmental stages | 148/200 | 1.50 | 3.00e-13 | - | no |
| PG | 4 | PO:0007631 | embryo development stages | 132/200 | 1.47 | 6.96e-10 | - | no |
| PG | 5 | PO:0004507 | D bilateral stage | 124/200 | 1.51 | 9.21e-10 | - | no |
| PG | 3 | PO:0001170 | seed development stages | 132/200 | 1.46 | 9.83e-10 | - | no |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 123/200 | 1.48 | 3.83e-09 | - | no |
| PG | 5 | PO:0001081 | F mature embryo stage | 119/200 | 1.50 | 5.64e-09 | - | no |
| PG | 5 | PO:0001185 | C globular stage | 121/200 | 1.47 | 9.10e-09 | - | no |
| KW | 0 | ipr002182 | - | 16/200 | 16.84 | 1.16e-16 | - | no |
| KW | 0 | disease | - | 18/200 | 10.29 | 1.89e-14 | - | no |
| KW | 0 | resistance | - | 21/200 | 7.38 | 1.57e-13 | - | no |
| KW | 0 | defense | - | 22/200 | 6.31 | 1.16e-12 | - | no |
| KW | 0 | ipr008271 | - | 24/200 | 4.91 | 2.76e-11 | - | no |
| KW | 0 | ipr011009 | - | 27/200 | 4.18 | 7.88e-11 | - | no |
| KW | 0 | ipr000719 | - | 26/200 | 4.17 | 1.75e-10 | - | no |
| KW | 0 | ipr000157 | - | 10/200 | 11.96 | 9.02e-10 | - | no |
| KW | 0 | interleukin | - | 10/200 | 11.96 | 9.02e-10 | - | no |
| KW | 0 | ipr002290 | - | 17/200 | 5.77 | 1.25e-09 | - | no |
| KW | 0 | response | - | 45/200 | 2.51 | 2.04e-09 | - | no |
| KW | 0 | signal | - | 20/200 | 4.56 | 3.91e-09 | - | no |
| KW | 0 | ipr001611 | - | 16/200 | 5.66 | 4.60e-09 | - | no |
| KW | 0 | kinase | - | 32/200 | 3.03 | 5.77e-09 | - | no |
| KW | 0 | ipr001245 | - | 15/200 | 5.88 | 7.35e-09 | - | no |
| KW | 0 | transduction | - | 17/200 | 5.14 | 7.54e-09 | - | no |
| KW | 0 | phosphorylation | - | 23/200 | 3.74 | 1.46e-08 | - | no |
| KW | 0 | leucine | - | 21/200 | 4.00 | 1.77e-08 | - | no |
| KW | 0 | ipr017442 | - | 21/200 | 3.99 | 1.88e-08 | - | no |
| KW | 0 | serine | - | 28/200 | 3.14 | 2.31e-08 | - | no |
| KW | 0 | threonine | - | 25/200 | 3.33 | 3.83e-08 | - | no |
| KW | 0 | ipr017441 | - | 18/200 | 4.19 | 7.59e-08 | - | no |
| KW | 0 | tyrosine | - | 16/200 | 4.51 | 1.24e-07 | - | no |
| KW | 0 | active | - | 25/200 | 3.05 | 2.11e-07 | - | no |
| KW | 0 | calmodulin | - | 11/200 | 5.96 | 4.03e-07 | - | no |
| KW | 0 | class | - | 20/200 | 3.34 | 7.18e-07 | - | no |
| KW | 0 | amino | - | 24/200 | 2.79 | 1.88e-06 | - | no |
| KW | 0 | receptor | - | 16/200 | 3.36 | 6.73e-06 | 5.00E-40 | no |
| KW | 0 | mediated | - | 13/200 | 3.68 | 1.46e-05 | - | no |
| KW | 0 | related | - | 49/200 | 1.74 | 2.66e-05 | - | no |
| KW | 0 | repeat | - | 28/200 | 2.16 | 4.13e-05 | - | no |
| KW | 0 | stimulus | - | 13/200 | 3.02 | 1.21e-04 | - | no |
| KW | 0 | dependent | - | 27/200 | 2.02 | 1.74e-04 | - | no |
| KW | 0 | atpase | - | 11/200 | 3.12 | 2.45e-04 | - | no |
| KW | 0 | transmembrane | - | 17/200 | 2.34 | 3.91e-04 | 0 | yes |
| KW | 0 | signaling | - | 11/200 | 2.95 | 4.00e-04 | - | no |
| KW | 0 | membrane | - | 42/200 | 1.58 | 9.14e-04 | 3.00E-88 | yes |
| KW | 0 | nucleus | - | 24/200 | 1.86 | 1.18e-03 | - | no |
| KW | 0 | terminal | - | 32/200 | 1.66 | 1.57e-03 | - | no |
| KW | 0 | transcription | - | 25/200 | 1.72 | 2.82e-03 | - | no |
| KW | 0 | nucleotide | - | 13/200 | 2.04 | 5.02e-03 | - | no |
| KW | 0 | stress | - | 10/200 | 2.13 | 7.91e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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