ARTADE2 予測遺伝子モデル データベースARTADE2_Gene (Ver.20100511)

OMAT1P010060
http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u100100600000i

OMAT1P010060(↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
OMAT1P0099400.816836-AT1G27950LTPG1 (GLYCOSYLPHOSPHATIDYLINOSITOL-ANCHORED LIPID PROTEIN TRANSFER 1)--
OMAT3P0103600.816163-AT3G27540glycosyl transferase family 17 protein--
OMAT3P0008900.792577-AT3G02890PHD finger protein-related--
OMAT3P1061900.77515-AT3G18750WNK6 (WITH NO K (=LYSINE) 6)--
OMAT1P0137000.772306-AT1G49740phospholipase C/ phosphoric diester hydrolase--
OMAT3P0018500.771321-AT3G05400sugar transporter, putative--
OMAT3P0180800.763667-AT3G63170chalcone isomerase--
OMAT5P1051600.762926-AT5G17700MATE efflux family protein--
OMAT2P0069500.761363-AT2G29940PDR3 (PLEIOTROPIC DRUG RESISTANCE 3)--
OMAT5P1031600.755467-AT5G11360LOCATED IN: cellular_component unknown--
Negatively Correlated Genes
GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
OMAT5P116580-0.823795-AT5G61590AP2 domain-containing transcription factor family protein--
OMAT4P107120-0.821125-AT4G25940epsin N-terminal homology (ENTH) domain-containing protein--
OMAT1P109930-0.820479-AT1G31540disease resistance protein (TIR-NBS-LRR class), putative--
OMAT2P101855-0.814031-AT2G15890MEE14 (maternal effect embryo arrest 14)--
OMAT1P115550-0.790139-AT1G63350disease resistance protein (CC-NBS-LRR class), putative--
OMAT4P101660-0.788231-AT4G08470MAPKKK10--
OMAT5P020740-0.785597-AT5G66790protein kinase family protein--
OMAT5P017630-0.77537---AT5G58330malate dehydrogenase (NADP), chloroplast, putative
OMAT3P012350-0.77208-AT3G47620AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14)--
OMAT1P104250-0.769891---AT1G13260RAV1

Get whole results

Over-Representation Analysis Result

p-value <= 3.90e-11:20 terms with high significance
3.90e-11 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1)Depth of the term in ontology treeID/TermDescriptionNumber of genesOver-Representative rate (*2)p-value (*3)PosMed p-value (*4)
(Link to PosMed)		Found on gene annotation
B4GO:0009908flower development10/2005.492.53e-06-no
B4GO:0006629lipid metabolic process11/2002.531.53e-03-no
B4GO:0044283small molecule biosynthetic process11/2002.422.18e-03-no
B3GO:0006810transport18/2001.767.31e-03-no
B3GO:0051234establishment of localization18/2001.757.53e-03-no
B3GO:0003006reproductive developmental process11/2002.009.82e-03-no
C3GO:0044464cell part120/2001.311.86e-05-yes
C3GO:0016020membrane47/2001.726.00e-05-no
C4GO:0031224intrinsic to membrane14/2002.613.53e-04-no
C3GO:0044425membrane part16/2002.022.61e-03-no
M3GO:0022857transmembrane transporter activity12/2002.144.49e-03-no
M4GO:0003677DNA binding23/2001.666.11e-03-no
M3GO:0016787hydrolase activity25/2001.607.24e-03-no
PS3PO:0009031sepal149/2001.618.64e-17-yes
PS3PO:0006001phyllome157/2001.533.94e-16-yes
PS3PO:0009006shoot162/2001.494.91e-16-yes
PS5PO:0009046flower158/2001.525.75e-16-yes
PS4PO:0009049inflorescence158/2001.511.15e-15-yes
PS3PO:0009032petal142/2001.621.86e-15-yes
PS4PO:0009026sporophyll141/2001.577.94e-14-yes
PS5PO:0009027megasporophyll133/2001.587.35e-13-yes
PS5PO:0008034leaf whorl142/2001.512.25e-12-yes
PS4PO:0008033phyllome whorl142/2001.512.25e-12-yes
PS3PO:0020091male gametophyte128/2001.543.90e-11-yes
PS4PO:0009001fruit143/2001.453.95e-11-yes
PS3PO:0006342infructescence143/2001.453.95e-11-yes
PS4PO:0009009embryo140/2001.451.51e-10-yes
PS3PO:0009010seed141/2001.441.73e-10-yes
PS5PO:0009028microsporophyll126/2001.505.93e-10-yes
PS5PO:0009052pedicel123/2001.518.54e-10-yes
PS4PO:0006345pollen tube52/2001.787.40e-06-no
PS4PO:0009047stem113/2001.341.65e-05-yes
PS4PO:0000037shoot apex111/2001.291.45e-04-yes
PS3PO:0000084sperm cell47/2001.452.84e-03-no
PS3PO:0020097generative cell47/2001.452.84e-03-no
PS4PO:0009025leaf110/2001.204.23e-03-yes
PS5PO:0008037seedling106/2001.204.75e-03-yes
PG4PO:00076164 anthesis155/2001.608.37e-18-yes
PG3PO:0007615flower development stages158/2001.511.25e-15-yes
PG4PO:00076003 floral organ development stages152/2001.498.43e-14-yes
PG5PO:0007604corolla developmental stages147/2001.498.98e-13-yes
PG5PO:0001185C globular stage130/2001.582.25e-12-yes
PG4PO:0007631embryo development stages137/2001.525.81e-12-yes
PG3PO:0001170seed development stages137/2001.518.53e-12-yes
PG5PO:0007605androecium developmental stages52/2001.788.59e-06-no
PG5PO:0001078E expanded cotyledon stage111/2001.342.40e-05-yes
PG5PO:0001081F mature embryo stage105/2001.321.00e-04-yes
PG5PO:0004507D bilateral stage106/2001.292.84e-04-yes
KW0anthesis-47/2003.582.64e-15-no
KW0globular-23/2006.136.92e-13-no
KW0petal-41/2002.814.03e-10-no
KW0stage-48/2002.488.13e-10-no
KW0differentiation-40/2002.653.89e-09-no
KW0expansion-39/2002.655.69e-09-no
KW0membrane-49/2001.846.08e-06-no
KW0germinated-17/2003.071.28e-05-no
KW0mature-20/2002.242.65e-04-no
KW0integral-11/2003.082.72e-04-no
KW0superfamily-11/2002.904.68e-04-no
KW0region-27/2001.875.86e-04-no
KW0transporter-16/2002.306.63e-04-no
KW0lipid-10/2002.917.32e-04-no
KW0transmembrane-16/2002.201.06e-03-no
KW0transferase-13/2002.123.66e-03-no
KW0pollen-17/2001.903.86e-03-no
KW0glycosyl-10/2002.353.96e-03-no
KW0catalytic-18/2001.776.72e-03-no
KW0hydrolase-14/2001.926.85e-03-no
KW0cotyledon-11/2002.096.98e-03-no
KW0conserved-22/2001.639.07e-031.00E-05no
(*1)[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2)([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3)P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4)PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
Top Page

OMAT1P010060

ARTADE2_Gene (Ver.20100511)

status_about_related_gene
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s43i
  • with_AGI_gene
Correlation_Score
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s9i
  • 0.741672
description
http://purl.org/dc/elements/1.1/description
  • OMAT1P010060(↑ Click "Links", if this line appears at the beginning.)

    Other supporting information

    Gene Model

    Correlation Plot


    Expression profile (Values are plotted in Log(2) values.)

    Genes with related expresssion profiles.
    Positively Correlated Genes
    GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
    OMAT1P0099400.816836-AT1G27950LTPG1 (GLYCOSYLPHOSPHATIDYLINOSITOL-ANCHORED LIPID PROTEIN TRANSFER 1)--
    OMAT3P0103600.816163-AT3G27540glycosyl transferase family 17 protein--
    OMAT3P0008900.792577-AT3G02890PHD finger protein-related--
    OMAT3P1061900.77515-AT3G18750WNK6 (WITH NO K (=LYSINE) 6)--
    OMAT1P0137000.772306-AT1G49740phospholipase C/ phosphoric diester hydrolase--
    OMAT3P0018500.771321-AT3G05400sugar transporter, putative--
    OMAT3P0180800.763667-AT3G63170chalcone isomerase--
    OMAT5P1051600.762926-AT5G17700MATE efflux family protein--
    OMAT2P0069500.761363-AT2G29940PDR3 (PLEIOTROPIC DRUG RESISTANCE 3)--
    OMAT5P1031600.755467-AT5G11360LOCATED IN: cellular_component unknown--
    Negatively Correlated Genes
    GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
    OMAT5P116580-0.823795-AT5G61590AP2 domain-containing transcription factor family protein--
    OMAT4P107120-0.821125-AT4G25940epsin N-terminal homology (ENTH) domain-containing protein--
    OMAT1P109930-0.820479-AT1G31540disease resistance protein (TIR-NBS-LRR class), putative--
    OMAT2P101855-0.814031-AT2G15890MEE14 (maternal effect embryo arrest 14)--
    OMAT1P115550-0.790139-AT1G63350disease resistance protein (CC-NBS-LRR class), putative--
    OMAT4P101660-0.788231-AT4G08470MAPKKK10--
    OMAT5P020740-0.785597-AT5G66790protein kinase family protein--
    OMAT5P017630-0.77537---AT5G58330malate dehydrogenase (NADP), chloroplast, putative
    OMAT3P012350-0.77208-AT3G47620AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14)--
    OMAT1P104250-0.769891---AT1G13260RAV1

    Get whole results

    Over-Representation Analysis Result

    p-value <= 3.90e-11:20 terms with high significance
    3.90e-11 < p-value <= 8.76e-06 :With considering multiple testing correction;
    p <= 1.00e-02 / 1142
    8.76e-06 < p-value <= 1.00e-02

    Type of term (*1)Depth of the term in ontology treeID/TermDescriptionNumber of genesOver-Representative rate (*2)p-value (*3)PosMed p-value (*4)
    (Link to PosMed)    		Found on gene annotation
    B4GO:0009908flower development10/2005.492.53e-06-no
    B4GO:0006629lipid metabolic process11/2002.531.53e-03-no
    B4GO:0044283small molecule biosynthetic process11/2002.422.18e-03-no
    B3GO:0006810transport18/2001.767.31e-03-no
    B3GO:0051234establishment of localization18/2001.757.53e-03-no
    B3GO:0003006reproductive developmental process11/2002.009.82e-03-no
    C3GO:0044464cell part120/2001.311.86e-05-yes
    C3GO:0016020membrane47/2001.726.00e-05-no
    C4GO:0031224intrinsic to membrane14/2002.613.53e-04-no
    C3GO:0044425membrane part16/2002.022.61e-03-no
    M3GO:0022857transmembrane transporter activity12/2002.144.49e-03-no
    M4GO:0003677DNA binding23/2001.666.11e-03-no
    M3GO:0016787hydrolase activity25/2001.607.24e-03-no
    PS3PO:0009031sepal149/2001.618.64e-17-yes
    PS3PO:0006001phyllome157/2001.533.94e-16-yes
    PS3PO:0009006shoot162/2001.494.91e-16-yes
    PS5PO:0009046flower158/2001.525.75e-16-yes
    PS4PO:0009049inflorescence158/2001.511.15e-15-yes
    PS3PO:0009032petal142/2001.621.86e-15-yes
    PS4PO:0009026sporophyll141/2001.577.94e-14-yes
    PS5PO:0009027megasporophyll133/2001.587.35e-13-yes
    PS5PO:0008034leaf whorl142/2001.512.25e-12-yes
    PS4PO:0008033phyllome whorl142/2001.512.25e-12-yes
    PS3PO:0020091male gametophyte128/2001.543.90e-11-yes
    PS4PO:0009001fruit143/2001.453.95e-11-yes
    PS3PO:0006342infructescence143/2001.453.95e-11-yes
    PS4PO:0009009embryo140/2001.451.51e-10-yes
    PS3PO:0009010seed141/2001.441.73e-10-yes
    PS5PO:0009028microsporophyll126/2001.505.93e-10-yes
    PS5PO:0009052pedicel123/2001.518.54e-10-yes
    PS4PO:0006345pollen tube52/2001.787.40e-06-no
    PS4PO:0009047stem113/2001.341.65e-05-yes
    PS4PO:0000037shoot apex111/2001.291.45e-04-yes
    PS3PO:0000084sperm cell47/2001.452.84e-03-no
    PS3PO:0020097generative cell47/2001.452.84e-03-no
    PS4PO:0009025leaf110/2001.204.23e-03-yes
    PS5PO:0008037seedling106/2001.204.75e-03-yes
    PG4PO:00076164 anthesis155/2001.608.37e-18-yes
    PG3PO:0007615flower development stages158/2001.511.25e-15-yes
    PG4PO:00076003 floral organ development stages152/2001.498.43e-14-yes
    PG5PO:0007604corolla developmental stages147/2001.498.98e-13-yes
    PG5PO:0001185C globular stage130/2001.582.25e-12-yes
    PG4PO:0007631embryo development stages137/2001.525.81e-12-yes
    PG3PO:0001170seed development stages137/2001.518.53e-12-yes
    PG5PO:0007605androecium developmental stages52/2001.788.59e-06-no
    PG5PO:0001078E expanded cotyledon stage111/2001.342.40e-05-yes
    PG5PO:0001081F mature embryo stage105/2001.321.00e-04-yes
    PG5PO:0004507D bilateral stage106/2001.292.84e-04-yes
    KW0anthesis-47/2003.582.64e-15-no
    KW0globular-23/2006.136.92e-13-no
    KW0petal-41/2002.814.03e-10-no
    KW0stage-48/2002.488.13e-10-no
    KW0differentiation-40/2002.653.89e-09-no
    KW0expansion-39/2002.655.69e-09-no
    KW0membrane-49/2001.846.08e-06-no
    KW0germinated-17/2003.071.28e-05-no
    KW0mature-20/2002.242.65e-04-no
    KW0integral-11/2003.082.72e-04-no
    KW0superfamily-11/2002.904.68e-04-no
    KW0region-27/2001.875.86e-04-no
    KW0transporter-16/2002.306.63e-04-no
    KW0lipid-10/2002.917.32e-04-no
    KW0transmembrane-16/2002.201.06e-03-no
    KW0transferase-13/2002.123.66e-03-no
    KW0pollen-17/2001.903.86e-03-no
    KW0glycosyl-10/2002.353.96e-03-no
    KW0catalytic-18/2001.776.72e-03-no
    KW0hydrolase-14/2001.926.85e-03-no
    KW0cotyledon-11/2002.096.98e-03-no
    KW0conserved-22/2001.639.07e-031.00E-05no
    (*1)[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
    (*2)([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
    (*3)P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
    (*4)PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
    Top Page
label
http://www.w3.org/2000/01/rdf-schema#label
  • OMAT1P010060
attributionURL
http://creativecommons.org/ns#attributionURL
gene_region
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s6i
seeAlso
http://www.w3.org/2000/01/rdf-schema#seeAlso
Target_TAIR_Locus
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i
Relative_gene_Analysis_result
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s5i
hasFile
http://metadb.riken.jp/meta/1.0/hasFile
Relative_ontology_term
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s40i
Tiling_Array_Analysis_Result
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s1i