OMAT1P016410http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u100164100000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P103150 | 0.922929 | - | - | - | AT1G09970 | LRR XI-23 |
| OMAT1P104980 | 0.920728 | - | - | - | AT1G15010 | unknown protein |
| OMAT1P102780 | 0.915136 | - | - | - | AT1G09070 | SRC2 (SOYBEAN GENE REGULATED BY COLD-2) |
| OMAT1P121330 | 0.911995 | - | - | - | AT1G80380 | phosphoribulokinase/uridine kinase-related |
| OMAT1P000190 | 0.906946 | - | - | - | AT1G01470 | LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) |
| OMAT3P102680 | 0.906882 | - | - | - | AT3G07790 | DGCR14-related |
| OMAT5P105980 | 0.906351 | - | - | - | AT5G20250 | DIN10 (DARK INDUCIBLE 10) |
| OMAT5P113520 | 0.905468 | - | - | - | AT5G52310 | LTI78 (LOW-TEMPERATURE-INDUCED 78) |
| OMAT3P008720 | 0.904482 | - | - | - | AT3G23030 | IAA2 (INDOLE-3-ACETIC ACID INDUCIBLE 2) |
| OMAT1P115310 | 0.902167 | - | - | - | AT1G62570 | FMO GS-OX4 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 4) |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT5P019460 | -0.815845 | - | AT5G63550 | EXPRESSED IN: guard cell | - | - |
| OMAT3P017540 | -0.806157 | - | AT3G61670 | unknown protein | - | - |
| OMAT1P014530 | -0.804095 | - | AT1G52730 | transducin family protein / WD-40 repeat family protein | - | - |
| OMAT1P022630 | -0.797979 | - | AT1G76880 | trihelix DNA-binding protein, putative | AT1G76878 | other RNA |
| OMAT5P104920 | -0.788436 | - | AT5G17010 | sugar transporter family protein | - | - |
| OMAT1P014380 | -0.779635 | - | AT1G52310 | protein kinase family protein / C-type lectin domain-containing protein | - | - |
| OMAT1P002090 | -0.779511 | - | AT1G06500 | unknown protein | - | - |
| OMAT5P014340 | -0.778267 | - | AT5G50020 | zinc finger (DHHC type) family protein | - | - |
| OMAT5P014020 | -0.772561 | - | AT5G49060 | DNAJ heat shock N-terminal domain-containing protein | - | - |
| OMAT1P018130 | -0.772503 | - | AT1G65380 | CLV2 (clavata 2) | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 5.65e-17 | :20 terms with high significance | |
| 5.65e-17 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0006950 | response to stress | 49/200 | 3.95 | 1.11e-17 | - | no |
| B | 3 | GO:0042221 | response to chemical stimulus | 46/200 | 4.03 | 5.65e-17 | - | no |
| B | 4 | GO:0010033 | response to organic substance | 30/200 | 4.49 | 1.19e-12 | - | no |
| B | 4 | GO:0009414 | response to water deprivation | 13/200 | 11.32 | 1.22e-11 | - | no |
| B | 5 | GO:0009737 | response to abscisic acid stimulus | 15/200 | 8.88 | 1.86e-11 | - | no |
| B | 4 | GO:0009415 | response to water | 13/200 | 10.81 | 2.27e-11 | - | no |
| B | 3 | GO:0009719 | response to endogenous stimulus | 23/200 | 4.46 | 4.76e-10 | - | no |
| B | 4 | GO:0009409 | response to cold | 13/200 | 8.35 | 6.93e-10 | - | no |
| B | 3 | GO:0009628 | response to abiotic stimulus | 26/200 | 3.51 | 7.25e-09 | - | no |
| B | 4 | GO:0009266 | response to temperature stimulus | 14/200 | 6.14 | 1.17e-08 | - | no |
| B | 4 | GO:0009725 | response to hormone stimulus | 20/200 | 4.23 | 1.41e-08 | - | no |
| B | 5 | GO:0009743 | response to carbohydrate stimulus | 10/200 | 7.96 | 6.39e-08 | - | no |
| B | 4 | GO:0006952 | defense response | 17/200 | 3.73 | 8.65e-07 | - | no |
| B | 4 | GO:0006979 | response to oxidative stress | 10/200 | 6.11 | 8.89e-07 | - | no |
| B | 3 | GO:0006955 | immune response | 10/200 | 5.28 | 3.67e-06 | - | no |
| B | 3 | GO:0009607 | response to biotic stimulus | 14/200 | 3.87 | 4.09e-06 | - | no |
| B | 3 | GO:0051707 | response to other organism | 13/200 | 3.88 | 7.98e-06 | - | no |
| B | 4 | GO:0006970 | response to osmotic stress | 11/200 | 4.39 | 9.49e-06 | - | no |
| B | 3 | GO:0050794 | regulation of cellular process | 31/200 | 2.03 | 5.34e-05 | - | no |
| B | 3 | GO:0050789 | regulation of biological process | 33/200 | 1.91 | 1.09e-04 | - | no |
| B | 4 | GO:0007165 | signal transduction | 10/200 | 3.48 | 1.64e-04 | - | no |
| B | 5 | GO:0051252 | regulation of RNA metabolic process | 14/200 | 2.68 | 2.68e-04 | - | no |
| B | 5 | GO:0032774 | RNA biosynthetic process | 14/200 | 2.56 | 4.39e-04 | - | no |
| B | 3 | GO:0023046 | signaling process | 10/200 | 3.08 | 4.55e-04 | - | no |
| B | 3 | GO:0023060 | signal transmission | 10/200 | 3.08 | 4.55e-04 | - | no |
| B | 3 | GO:0044237 | cellular metabolic process | 65/200 | 1.38 | 1.59e-03 | - | no |
| B | 3 | GO:0009058 | biosynthetic process | 44/200 | 1.51 | 1.69e-03 | - | no |
| B | 5 | GO:0006464 | protein modification process | 20/200 | 1.92 | 1.83e-03 | - | no |
| B | 5 | GO:0019219 | regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 19/200 | 1.90 | 2.66e-03 | - | no |
| B | 4 | GO:0044249 | cellular biosynthetic process | 42/200 | 1.49 | 2.71e-03 | - | no |
| B | 4 | GO:0031323 | regulation of cellular metabolic process | 20/200 | 1.85 | 2.86e-03 | - | no |
| B | 4 | GO:0051171 | regulation of nitrogen compound metabolic process | 19/200 | 1.88 | 2.98e-03 | - | no |
| B | 4 | GO:0080090 | regulation of primary metabolic process | 19/200 | 1.80 | 4.60e-03 | - | no |
| B | 5 | GO:0010556 | regulation of macromolecule biosynthetic process | 18/200 | 1.83 | 4.86e-03 | - | no |
| B | 4 | GO:0043412 | macromolecule modification | 20/200 | 1.76 | 4.95e-03 | - | no |
| B | 4 | GO:0009889 | regulation of biosynthetic process | 18/200 | 1.79 | 5.94e-03 | - | no |
| B | 5 | GO:0031326 | regulation of cellular biosynthetic process | 18/200 | 1.79 | 5.94e-03 | - | no |
| B | 5 | GO:0006350 | transcription | 18/200 | 1.76 | 7.01e-03 | - | no |
| B | 3 | GO:0019222 | regulation of metabolic process | 20/200 | 1.70 | 7.47e-03 | - | no |
| B | 3 | GO:0044238 | primary metabolic process | 64/200 | 1.29 | 8.30e-03 | - | no |
| C | 3 | GO:0016020 | membrane | 47/200 | 1.72 | 6.00e-05 | - | no |
| C | 5 | GO:0005634 | nucleus | 30/200 | 1.92 | 1.95e-04 | - | no |
| C | 3 | GO:0044424 | intracellular part | 72/200 | 1.41 | 3.55e-04 | - | no |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 63/200 | 1.43 | 6.41e-04 | - | no |
| C | 3 | GO:0043227 | membrane-bounded organelle | 63/200 | 1.43 | 6.43e-04 | - | no |
| C | 3 | GO:0005622 | intracellular | 73/200 | 1.37 | 7.97e-04 | - | no |
| C | 3 | GO:0044464 | cell part | 111/200 | 1.21 | 2.24e-03 | - | no |
| C | 3 | GO:0043229 | intracellular organelle | 63/200 | 1.36 | 2.39e-03 | - | no |
| M | 3 | GO:0003700 | transcription factor activity | 23/200 | 2.28 | 7.88e-05 | - | no |
| M | 4 | GO:0003677 | DNA binding | 24/200 | 1.73 | 3.06e-03 | - | no |
| M | 3 | GO:0016740 | transferase activity | 27/200 | 1.65 | 3.63e-03 | - | no |
| M | 5 | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | 12/200 | 1.93 | 9.97e-03 | - | no |
| PS | 4 | PO:0020030 | cotyledon | 140/200 | 1.91 | 2.40e-22 | - | no |
| PS | 4 | PO:0009025 | leaf | 157/200 | 1.71 | 8.52e-22 | - | no |
| PS | 3 | PO:0006001 | phyllome | 165/200 | 1.61 | 5.05e-21 | - | no |
| PS | 5 | PO:0020039 | leaf lamina | 146/200 | 1.77 | 1.68e-20 | - | no |
| PS | 5 | PO:0009028 | microsporophyll | 147/200 | 1.75 | 2.86e-20 | - | no |
| PS | 5 | PO:0008037 | seedling | 150/200 | 1.70 | 1.49e-19 | - | no |
| PS | 5 | PO:0020038 | petiole | 137/200 | 1.80 | 6.28e-19 | - | no |
| PS | 4 | PO:0009047 | stem | 145/200 | 1.72 | 8.26e-19 | - | no |
| PS | 3 | PO:0009005 | root | 150/200 | 1.67 | 1.32e-18 | - | no |
| PS | 4 | PO:0009026 | sporophyll | 150/200 | 1.67 | 1.35e-18 | - | no |
| PS | 3 | PO:0009006 | shoot | 166/200 | 1.53 | 1.92e-18 | - | no |
| PS | 5 | PO:0008034 | leaf whorl | 153/200 | 1.62 | 4.84e-18 | - | no |
| PS | 4 | PO:0008033 | phyllome whorl | 153/200 | 1.62 | 4.84e-18 | - | no |
| PS | 4 | PO:0009001 | fruit | 154/200 | 1.57 | 1.54e-16 | - | no |
| PS | 3 | PO:0006342 | infructescence | 154/200 | 1.57 | 1.54e-16 | - | no |
| PS | 4 | PO:0009009 | embryo | 152/200 | 1.57 | 2.72e-16 | - | no |
| PS | 3 | PO:0009031 | sepal | 148/200 | 1.60 | 3.01e-16 | - | no |
| PS | 5 | PO:0009046 | flower | 158/200 | 1.52 | 5.75e-16 | - | no |
| PS | 3 | PO:0020091 | male gametophyte | 138/200 | 1.66 | 9.00e-16 | - | no |
| PS | 3 | PO:0009010 | seed | 152/200 | 1.55 | 1.07e-15 | - | no |
| PS | 4 | PO:0009049 | inflorescence | 158/200 | 1.51 | 1.15e-15 | - | no |
| PS | 5 | PO:0009027 | megasporophyll | 138/200 | 1.64 | 2.97e-15 | - | no |
| PS | 3 | PO:0009032 | petal | 141/200 | 1.61 | 5.99e-15 | - | no |
| PS | 4 | PO:0000037 | shoot apex | 139/200 | 1.62 | 9.95e-15 | - | no |
| PS | 4 | PO:0000230 | inflorescence meristem | 129/200 | 1.66 | 5.94e-14 | - | no |
| PS | 3 | PO:0009013 | meristem | 130/200 | 1.62 | 3.74e-13 | - | no |
| PS | 5 | PO:0000013 | cauline leaf | 125/200 | 1.62 | 2.44e-12 | - | no |
| PS | 4 | PO:0006345 | pollen tube | 58/200 | 1.99 | 4.42e-08 | - | no |
| PS | 5 | PO:0009052 | pedicel | 118/200 | 1.45 | 5.51e-08 | - | no |
| PS | 3 | PO:0000084 | sperm cell | 47/200 | 1.45 | 2.84e-03 | - | no |
| PS | 3 | PO:0020097 | generative cell | 47/200 | 1.45 | 2.84e-03 | - | no |
| PG | 5 | PO:0007133 | leaf production | 147/200 | 1.75 | 4.07e-20 | - | no |
| PG | 4 | PO:0007112 | 1 main shoot growth | 147/200 | 1.75 | 4.17e-20 | - | no |
| PG | 3 | PO:0007134 | A vegetative growth | 147/200 | 1.74 | 8.92e-20 | - | no |
| PG | 4 | PO:0007616 | 4 anthesis | 154/200 | 1.59 | 3.14e-17 | - | no |
| PG | 3 | PO:0007615 | flower development stages | 159/200 | 1.52 | 3.47e-16 | - | no |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 155/200 | 1.52 | 2.33e-15 | - | no |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 131/200 | 1.70 | 2.59e-15 | - | no |
| PG | 3 | PO:0001050 | leaf development stages | 131/200 | 1.70 | 2.72e-15 | - | no |
| PG | 5 | PO:0007604 | corolla developmental stages | 150/200 | 1.52 | 3.09e-14 | - | no |
| PG | 4 | PO:0007631 | embryo development stages | 130/200 | 1.44 | 4.04e-09 | - | no |
| PG | 3 | PO:0001170 | seed development stages | 130/200 | 1.44 | 5.62e-09 | - | no |
| PG | 5 | PO:0001185 | C globular stage | 121/200 | 1.47 | 9.10e-09 | - | no |
| PG | 5 | PO:0004507 | D bilateral stage | 120/200 | 1.46 | 2.68e-08 | - | no |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 116/200 | 1.40 | 8.92e-07 | - | no |
| PG | 5 | PO:0001081 | F mature embryo stage | 112/200 | 1.41 | 1.22e-06 | - | no |
| PG | 5 | PO:0007605 | androecium developmental stages | 48/200 | 1.64 | 1.56e-04 | - | no |
| KW | 0 | response | - | 62/200 | 3.46 | 1.85e-19 | - | no |
| KW | 0 | stress | - | 30/200 | 6.40 | 8.94e-17 | - | no |
| KW | 0 | induced | - | 18/200 | 6.58 | 4.89e-11 | - | no |
| KW | 0 | oxidative | - | 10/200 | 7.11 | 2.00e-07 | - | no |
| KW | 0 | encodes | - | 49/200 | 1.92 | 1.84e-06 | - | no |
| KW | 0 | responsive | - | 12/200 | 4.01 | 1.14e-05 | - | no |
| KW | 0 | processes | - | 12/200 | 3.96 | 1.29e-05 | - | no |
| KW | 0 | membrane | - | 48/200 | 1.80 | 1.35e-05 | - | no |
| KW | 0 | cytoplasm | - | 12/200 | 3.87 | 1.62e-05 | - | no |
| KW | 0 | superfamily | - | 13/200 | 3.43 | 3.11e-05 | - | no |
| KW | 0 | nucleus | - | 28/200 | 2.17 | 3.68e-05 | - | no |
| KW | 0 | regulator | - | 11/200 | 3.76 | 4.26e-05 | - | no |
| KW | 0 | subfamily | - | 11/200 | 3.41 | 1.08e-04 | - | no |
| KW | 0 | stimulus | - | 13/200 | 3.02 | 1.21e-04 | - | no |
| KW | 0 | transcription | - | 29/200 | 2.00 | 1.23e-04 | - | no |
| KW | 0 | expression | - | 13/200 | 2.69 | 3.93e-04 | - | no |
| KW | 0 | signal | - | 12/200 | 2.73 | 5.14e-04 | - | no |
| KW | 0 | transduction | - | 10/200 | 3.02 | 5.38e-04 | - | no |
| KW | 0 | hydrolase | - | 16/200 | 2.19 | 1.12e-03 | - | no |
| KW | 0 | factor | - | 30/200 | 1.71 | 1.30e-03 | - | no |
| KW | 0 | process | - | 33/200 | 1.61 | 2.21e-03 | - | no |
| KW | 0 | biosynthetic | - | 15/200 | 2.10 | 2.33e-03 | - | no |
| KW | 0 | putative | - | 36/200 | 1.56 | 2.55e-03 | - | no |
| KW | 0 | class | - | 13/200 | 2.17 | 2.96e-03 | - | no |
| KW | 0 | leaves | - | 11/200 | 2.22 | 4.36e-03 | - | no |
| KW | 0 | terminal | - | 30/200 | 1.56 | 5.56e-03 | - | no |
| KW | 0 | regulation | - | 22/200 | 1.66 | 6.91e-03 | - | no |
| KW | 0 | ipr017442 | - | 11/200 | 2.09 | 7.04e-03 | - | no |
| KW | 0 | related | - | 40/200 | 1.42 | 7.66e-03 | - | no |
| KW | 0 | serine | - | 16/200 | 1.80 | 8.42e-03 | - | no |
| KW | 0 | threonine | - | 14/200 | 1.87 | 8.71e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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