OMAT1P106720http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u101067200000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P013500 | 0.915443 | - | AT1G49240 | ACT8 (ACTIN 8) | - | - |
| OMAT4P108670 | 0.905487 | - | AT4G30670 | unknown protein | - | - |
| OMAT5P111740 | 0.902983 | - | ath-MIR160c,AT5G46845 | [ath-MIR160c]ath-MIR160c, [AT5G46845]MIR160/MIR160C (MICRORNA160) | - | - |
| OMAT4P007120 | 0.897761 | - | AT4G23470 | hydroxyproline-rich glycoprotein family protein | - | - |
| OMAT4P106340 | 0.889277 | - | AT4G23700 | ATCHX17 (CATION/H+ EXCHANGER 17) | - | - |
| OMAT1P021670 | 0.887711 | - | AT1G74458,ath-MIR415 | [AT1G74458]unknown protein, [ath-MIR415]ath-MIR415 | - | - |
| OMAT4P011840 | 0.886484 | - | AT4G34580 | COW1 (CAN OF WORMS1) | - | - |
| OMAT3P100260 | 0.88037 | - | AT3G01472,AT3G01470 | [AT3G01472]CPuORF33 (Conserved peptide upstream open reading frame 33), [AT3G01470]ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1) | - | - |
| OMAT4P012140 | 0.878883 | - | AT4G35350 | XCP1 (XYLEM CYSTEINE PEPTIDASE 1) | - | - |
| OMAT1P109240 | 0.878853 | - | AT1G29300 | UNE1 (unfertilized embryo sac 1) | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT3P013820 | -0.722295 | - | AT3G51500,AT3G51510 | [AT3G51500]unknown protein, [AT3G51510]unknown protein | - | - |
| OMAT1P000220 | -0.691129 | - | AT1G01500 | unknown protein | - | - |
| OMAT4P008470 | -0.686106 | - | AT4G26700 | ATFIM1 | - | - |
| OMAT4P102160 | -0.631771 | - | AT4G10920 | KELP | - | - |
| OMAT1P003390 | -0.616744 | - | AT1G09795 | ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2) | - | - |
| OMAT2P107920 | -0.604368 | - | AT2G35345 | unknown protein | - | - |
| OMAT1P117160 | -0.601829 | - | AT1G68660 | FUNCTIONS IN: molecular_function unknown | - | - |
| OMAT5P008580 | -0.594845 | - | AT5G25130 | CYP71B12 | - | - |
| OMAT4P001380 | -0.592817 | - | AT4G04020 | FIB (FIBRILLIN) | - | - |
| OMAT2P101930 | -0.584965 | - | AT2G16070 | PDV2 (PLASTID DIVISION2) | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.46e-07 | :20 terms with high significance | |
| 1.46e-07 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0042221 | response to chemical stimulus | 32/200 | 2.81 | 3.68e-08 | - | no |
| B | 3 | GO:0006950 | response to stress | 33/200 | 2.66 | 8.11e-08 | 2.13E-16 | no |
| B | 4 | GO:0006979 | response to oxidative stress | 11/200 | 6.72 | 1.10e-07 | - | no |
| B | 3 | GO:0006810 | transport | 23/200 | 2.24 | 9.87e-05 | 8.46E-16 | no |
| B | 3 | GO:0051234 | establishment of localization | 23/200 | 2.24 | 1.03e-04 | - | no |
| B | 4 | GO:0010033 | response to organic substance | 15/200 | 2.24 | 1.19e-03 | - | no |
| B | 3 | GO:0009628 | response to abiotic stimulus | 16/200 | 2.16 | 1.32e-03 | - | no |
| B | 3 | GO:0009719 | response to endogenous stimulus | 11/200 | 2.13 | 5.96e-03 | - | no |
| B | 4 | GO:0009725 | response to hormone stimulus | 10/200 | 2.12 | 8.35e-03 | - | no |
| B | 3 | GO:0044281 | small molecule metabolic process | 16/200 | 1.78 | 9.08e-03 | - | no |
| C | 3 | GO:0044464 | cell part | 124/200 | 1.36 | 1.32e-06 | - | yes |
| C | 3 | GO:0012505 | endomembrane system | 46/200 | 1.89 | 5.79e-06 | - | no |
| C | 4 | GO:0005618 | cell wall | 13/200 | 3.92 | 7.21e-06 | 1.18E-16 | no |
| C | 3 | GO:0030312 | external encapsulating structure | 13/200 | 3.89 | 7.82e-06 | - | no |
| C | 3 | GO:0016020 | membrane | 44/200 | 1.61 | 4.68e-04 | 1.00E-20 | yes |
| C | 4 | GO:0031224 | intrinsic to membrane | 11/200 | 2.05 | 8.07e-03 | - | no |
| M | 4 | GO:0016684 | oxidoreductase activity, acting on peroxide as acceptor | 11/200 | 17.59 | 1.71e-12 | - | no |
| M | 3 | GO:0004601 | peroxidase activity | 11/200 | 17.59 | 1.71e-12 | - | no |
| M | 3 | GO:0016491 | oxidoreductase activity | 29/200 | 3.44 | 1.67e-09 | - | no |
| M | 4 | GO:0020037 | heme binding | 13/200 | 7.43 | 3.11e-09 | - | no |
| M | 3 | GO:0046906 | tetrapyrrole binding | 13/200 | 6.82 | 9.25e-09 | - | no |
| M | 4 | GO:0043169 | cation binding | 32/200 | 2.23 | 6.35e-06 | - | no |
| M | 3 | GO:0043167 | ion binding | 32/200 | 2.23 | 6.35e-06 | - | no |
| M | 5 | GO:0046872 | metal ion binding | 30/200 | 2.21 | 1.41e-05 | - | no |
| M | 3 | GO:0016740 | transferase activity | 27/200 | 1.65 | 3.63e-03 | - | no |
| PS | 3 | PO:0009005 | root | 156/200 | 1.73 | 2.65e-22 | - | yes |
| PS | 4 | PO:0006036 | root epidermis | 11/200 | 17.59 | 1.71e-12 | - | no |
| PS | 5 | PO:0008037 | seedling | 115/200 | 1.30 | 5.39e-05 | - | yes |
| PS | 4 | PO:0009001 | fruit | 119/200 | 1.21 | 1.32e-03 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 119/200 | 1.21 | 1.32e-03 | - | yes |
| PS | 4 | PO:0009009 | embryo | 115/200 | 1.19 | 3.68e-03 | - | yes |
| PS | 3 | PO:0009010 | seed | 116/200 | 1.19 | 4.01e-03 | - | yes |
| KW | 0 | peroxidase | - | 11/200 | 15.50 | 7.85e-12 | - | no |
| KW | 0 | fungal | - | 11/200 | 13.96 | 2.73e-11 | - | no |
| KW | 0 | hypocotyl | - | 17/200 | 7.29 | 2.92e-11 | - | no |
| KW | 0 | response | - | 47/200 | 2.62 | 1.97e-10 | 3.49E-15 | no |
| KW | 0 | stress | - | 21/200 | 4.48 | 2.33e-09 | 7.86E-16 | no |
| KW | 0 | visible | - | 18/200 | 4.86 | 7.38e-09 | 9.31E-19 | no |
| KW | 0 | copper | - | 11/200 | 8.28 | 1.12e-08 | - | no |
| KW | 0 | oxidative | - | 11/200 | 7.82 | 2.12e-08 | - | no |
| KW | 0 | bacterial | - | 11/200 | 7.29 | 4.59e-08 | 1.36E-15 | no |
| KW | 0 | leaves | - | 19/200 | 3.84 | 1.46e-07 | 9.42E-17 | yes |
| KW | 0 | endomembrane | - | 46/200 | 1.95 | 2.75e-06 | - | no |
| KW | 0 | electron | - | 14/200 | 3.93 | 3.41e-06 | - | no |
| KW | 0 | system | - | 46/200 | 1.90 | 5.38e-06 | - | no |
| KW | 0 | carrier | - | 14/200 | 3.49 | 1.41e-05 | 4.26E-16 | no |
| KW | 0 | member | - | 25/200 | 2.28 | 3.99e-05 | - | no |
| KW | 0 | membrane | - | 45/200 | 1.69 | 1.25e-04 | 1.00E-20 | yes |
| KW | 0 | anthesis | - | 27/200 | 2.05 | 1.27e-04 | - | no |
| KW | 0 | active | - | 19/200 | 2.32 | 2.24e-04 | - | no |
| KW | 0 | integral | - | 11/200 | 3.08 | 2.72e-04 | 1.00E-20 | no |
| KW | 0 | putative | - | 38/200 | 1.65 | 7.17e-04 | - | no |
| KW | 0 | transport | - | 20/200 | 2.06 | 7.94e-04 | 8.46E-16 | no |
| KW | 0 | differentiation | - | 27/200 | 1.79 | 1.17e-03 | - | no |
| KW | 0 | glycosyl | - | 11/200 | 2.58 | 1.30e-03 | - | no |
| KW | 0 | plasma | - | 21/200 | 1.83 | 2.63e-03 | 1.69E-15 | yes |
| KW | 0 | petal | - | 25/200 | 1.71 | 3.00e-03 | - | no |
| KW | 0 | group | - | 12/200 | 2.23 | 3.15e-03 | - | no |
| KW | 0 | receptor | - | 11/200 | 2.31 | 3.18e-03 | 1.00E-31 | no |
| KW | 0 | expansion | - | 25/200 | 1.70 | 3.31e-03 | - | no |
| KW | 0 | ipr000719 | - | 13/200 | 2.09 | 4.19e-03 | - | no |
| KW | 0 | ipr011009 | - | 13/200 | 2.01 | 5.76e-03 | - | no |
| KW | 0 | hydrolase | - | 14/200 | 1.92 | 6.85e-03 | - | no |
| KW | 0 | leucine | - | 11/200 | 2.10 | 6.86e-03 | - | no |
| KW | 0 | ipr017442 | - | 11/200 | 2.09 | 7.04e-03 | - | no |
| KW | 0 | threonine | - | 14/200 | 1.87 | 8.71e-03 | - | no |
| KW | 0 | phosphorylation | - | 12/200 | 1.95 | 9.24e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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