OMAT2P004430http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u200044300000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT3P110090 | 0.884084 | - | AT3G45040 | phosphatidate cytidylyltransferase family protein | - | - |
| OMAT5P004380 | 0.846841 | - | - | - | AT5G13190 | INVOLVED IN: biological_process unknown |
| OMAT5P001625 | 0.845819 | - | - | - | AT5G05170 | CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) |
| OMAT1P010730 | 0.844905 | - | AT1G30640 | protein kinase, putative | - | - |
| OMAT5P108210 | 0.808034 | - | AT5G27930 | protein phosphatase 2C, putative / PP2C, putative | - | - |
| OMAT5P104910 | 0.80095 | - | AT5G17000 | NADP-dependent oxidoreductase, putative | - | - |
| OMAT1P115290 | 0.800074 | - | - | - | AT1G62480 | vacuolar calcium-binding protein-related |
| OMAT3P014650 | 0.795403 | - | AT3G53620 | AtPPa4 (Arabidopsis thaliana pyrophosphorylase 4) | - | - |
| OMAT2P105230 | 0.791432 | - | - | - | AT2G27080 | harpin-induced protein-related / HIN1-related / harpin-responsive protein-related |
| OMAT2P008560 | 0.788475 | - | AT2G34600 | JAZ7 (JASMONATE-ZIM-DOMAIN PROTEIN 7) | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT2P011805 | -0.692891 | - | AT2G43090 | aconitase C-terminal domain-containing protein | - | - |
| OMAT5P011950 | -0.679076 | - | AT5G43140 | peroxisomal membrane 22 kDa family protein | - | - |
| OMAT3P108250 | -0.667614 | - | AT3G25410 | bile acid:sodium symporter family protein | - | - |
| OMAT3P010830 | -0.649961 | - | AT3G28910 | MYB30 (MYB DOMAIN PROTEIN 30) | - | - |
| OMAT3P001860 | -0.635159 | - | AT3G05410 | calcium ion binding | - | - |
| OMAT3P008060 | -0.633439 | - | AT3G21200 | unknown protein | - | - |
| OMAT3P016440 | -0.626753 | - | AT3G58610 | ketol-acid reductoisomerase | - | - |
| OMAT2P008140 | -0.621604 | - | AT2G33255 | catalytic/ hydrolase/ phosphoglycolate phosphatase | - | - |
| OMAT1P021740 | -0.618874 | - | AT1G74670 | gibberellin-responsive protein, putative | - | - |
| OMAT3P017120 | -0.618129 | - | AT3G60620 | phosphatidate cytidylyltransferase family protein | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 2.05e-15 | :20 terms with high significance | |
| 2.05e-15 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0010033 | response to organic substance | 16/200 | 2.39 | 4.30e-04 | - | no |
| B | 3 | GO:0042221 | response to chemical stimulus | 23/200 | 2.02 | 4.75e-04 | - | no |
| B | 5 | GO:0006464 | protein modification process | 20/200 | 1.92 | 1.83e-03 | - | no |
| B | 5 | GO:0006796 | phosphate metabolic process | 14/200 | 2.11 | 2.92e-03 | - | no |
| B | 4 | GO:0006793 | phosphorus metabolic process | 14/200 | 2.11 | 2.95e-03 | - | no |
| B | 4 | GO:0043412 | macromolecule modification | 20/200 | 1.76 | 4.95e-03 | - | no |
| B | 3 | GO:0009719 | response to endogenous stimulus | 11/200 | 2.13 | 5.96e-03 | - | no |
| B | 3 | GO:0006950 | response to stress | 21/200 | 1.69 | 6.60e-03 | - | no |
| C | 4 | GO:0005886 | plasma membrane | 29/200 | 2.34 | 6.42e-06 | - | no |
| C | 3 | GO:0016020 | membrane | 47/200 | 1.72 | 6.00e-05 | - | no |
| C | 4 | GO:0005618 | cell wall | 11/200 | 3.31 | 1.41e-04 | - | no |
| C | 3 | GO:0030312 | external encapsulating structure | 11/200 | 3.29 | 1.51e-04 | - | no |
| C | 3 | GO:0044464 | cell part | 108/200 | 1.18 | 7.86e-03 | - | no |
| M | 3 | GO:0016787 | hydrolase activity | 30/200 | 1.92 | 1.91e-04 | - | no |
| M | 3 | GO:0016740 | transferase activity | 30/200 | 1.83 | 4.23e-04 | - | no |
| M | 5 | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | 15/200 | 2.42 | 5.45e-04 | - | no |
| M | 5 | GO:0016301 | kinase activity | 17/200 | 2.11 | 1.27e-03 | - | no |
| M | 4 | GO:0016772 | transferase activity, transferring phosphorus-containing groups | 18/200 | 1.96 | 2.24e-03 | - | no |
| PS | 3 | PO:0009005 | root | 156/200 | 1.73 | 2.65e-22 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 150/200 | 1.79 | 4.03e-22 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 155/200 | 1.72 | 1.20e-21 | - | yes |
| PS | 5 | PO:0008037 | seedling | 151/200 | 1.71 | 3.74e-20 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 136/200 | 1.85 | 6.00e-20 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 143/200 | 1.73 | 9.57e-19 | - | yes |
| PS | 4 | PO:0009025 | leaf | 152/200 | 1.65 | 1.04e-18 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 161/200 | 1.57 | 1.82e-18 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 143/200 | 1.72 | 1.83e-18 | - | yes |
| PS | 4 | PO:0009047 | stem | 142/200 | 1.68 | 3.88e-17 | - | yes |
| PS | 3 | PO:0009006 | shoot | 163/200 | 1.50 | 1.29e-16 | - | yes |
| PS | 4 | PO:0009009 | embryo | 151/200 | 1.56 | 9.44e-16 | - | yes |
| PS | 3 | PO:0009013 | meristem | 135/200 | 1.68 | 1.46e-15 | - | yes |
| PS | 5 | PO:0009046 | flower | 157/200 | 1.51 | 2.05e-15 | - | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 132/200 | 1.70 | 2.06e-15 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 138/200 | 1.64 | 2.97e-15 | - | yes |
| PS | 3 | PO:0009031 | sepal | 146/200 | 1.58 | 3.39e-15 | - | yes |
| PS | 3 | PO:0009010 | seed | 151/200 | 1.54 | 3.62e-15 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 157/200 | 1.50 | 4.04e-15 | - | yes |
| PS | 4 | PO:0009001 | fruit | 151/200 | 1.54 | 6.33e-15 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 151/200 | 1.54 | 6.33e-15 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 145/200 | 1.54 | 8.70e-14 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 145/200 | 1.54 | 8.70e-14 | - | yes |
| PS | 4 | PO:0006345 | pollen tube | 67/200 | 2.30 | 4.23e-12 | - | yes |
| PS | 5 | PO:0020038 | petiole | 122/200 | 1.60 | 1.49e-11 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 120/200 | 1.55 | 2.94e-10 | - | yes |
| PS | 3 | PO:0009032 | petal | 130/200 | 1.48 | 4.93e-10 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 127/200 | 1.48 | 1.72e-09 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 121/200 | 1.49 | 4.81e-09 | - | no |
| PS | 3 | PO:0000084 | sperm cell | 50/200 | 1.54 | 5.13e-04 | - | no |
| PS | 3 | PO:0020097 | generative cell | 50/200 | 1.54 | 5.13e-04 | - | no |
| PG | 3 | PO:0007134 | A vegetative growth | 145/200 | 1.71 | 1.30e-18 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 144/200 | 1.71 | 2.26e-18 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 144/200 | 1.71 | 2.31e-18 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 160/200 | 1.53 | 9.32e-17 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 153/200 | 1.58 | 1.14e-16 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 157/200 | 1.54 | 1.85e-16 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 152/200 | 1.54 | 2.87e-15 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 118/200 | 1.53 | 1.27e-09 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 118/200 | 1.53 | 1.32e-09 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 116/200 | 1.41 | 4.44e-07 | - | no |
| PG | 5 | PO:0007605 | androecium developmental stages | 54/200 | 1.84 | 1.74e-06 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 122/200 | 1.35 | 1.96e-06 | - | no |
| PG | 3 | PO:0001170 | seed development stages | 122/200 | 1.35 | 2.56e-06 | - | no |
| PG | 5 | PO:0004507 | D bilateral stage | 112/200 | 1.36 | 8.57e-06 | - | no |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 112/200 | 1.35 | 1.29e-05 | - | no |
| PG | 5 | PO:0001081 | F mature embryo stage | 107/200 | 1.35 | 3.14e-05 | - | no |
| KW | 0 | plasma | - | 28/200 | 2.44 | 4.05e-06 | - | no |
| KW | 0 | membrane | - | 48/200 | 1.80 | 1.35e-05 | - | no |
| KW | 0 | terminal | - | 37/200 | 1.92 | 3.71e-05 | 6.83E-16 | no |
| KW | 0 | response | - | 35/200 | 1.95 | 4.26e-05 | - | no |
| KW | 0 | cytoplasm | - | 11/200 | 3.55 | 7.39e-05 | - | no |
| KW | 0 | stress | - | 13/200 | 2.77 | 2.91e-04 | - | no |
| KW | 0 | hydrolase | - | 17/200 | 2.33 | 4.14e-04 | - | no |
| KW | 0 | catalytic | - | 21/200 | 2.07 | 5.72e-04 | - | no |
| KW | 0 | threonine | - | 17/200 | 2.27 | 5.72e-04 | - | no |
| KW | 0 | ipr017442 | - | 13/200 | 2.47 | 9.06e-04 | - | no |
| KW | 0 | ipr000719 | - | 14/200 | 2.25 | 1.59e-03 | - | no |
| KW | 0 | ipr011009 | - | 14/200 | 2.17 | 2.27e-03 | - | no |
| KW | 0 | member | - | 20/200 | 1.83 | 3.34e-03 | - | no |
| KW | 0 | active | - | 16/200 | 1.95 | 3.70e-03 | - | no |
| KW | 0 | serine | - | 17/200 | 1.91 | 3.80e-03 | 3.52E-16 | no |
| KW | 0 | ipr008271 | - | 11/200 | 2.25 | 3.92e-03 | - | no |
| KW | 0 | glycosyl | - | 10/200 | 2.35 | 3.96e-03 | - | no |
| KW | 0 | ipr017441 | - | 10/200 | 2.33 | 4.17e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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