Other supporting information

Gene Model

Correlation Plot

Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.

Positively Correlated Genes
Gens	PCC	Definition	Overlap gene	Definition	Overlap gene(antisense)	Definition
AT1G73030.1	0.85031	VPS46.2	OMAT1P021160	-	-	-
AT3G45040.1	0.850074	phosphatidate cytidylyltransferase family protein	OMAT3P110090	-	-	-
AT1G30640.1	0.837165	protein kinase, putative	OMAT1P010730	-	-	-
AT1G21080.1	0.834866	DNAJ heat shock N-terminal domain-containing protein	-	-	-	-
AT5G13190.1	0.83357	INVOLVED IN: biological_process unknown	OMAT5P103660	-	OMAT5P004380	-
AT5G01380.1	0.811002	transcription factor	OMAT5P100140	-	-	-
AT2G34600.1	0.80929	JAZ7 (JASMONATE-ZIM-DOMAIN PROTEIN 7)	OMAT2P008560	-	-	-
AT1G26300.1	0.808074	BSD domain-containing protein	-	-	-	-
AT5G17000.1	0.801157	NADP-dependent oxidoreductase, putative	OMAT5P104910	-	-	-
AT2G32250.1	0.796627	FRS2 (FAR1-related sequence 2)	-	-	-	-
Negatively Correlated Genes
Gens	PCC	Definition	Overlap gene	Definition	Overlap gene(antisense)	Definition
AT1G47630.1	-0.779623	member of CYP96A	-	-	-	-
AT1G58450.1	-0.771887	peptidyl-prolyl cis-trans isomerase FKBP-type family protein	-	-	-	-
AT5G01440.1	-0.737614	insulin-degrading enzyme-related	-	-	-	-
AT2G32940.1	-0.725924	AGO6 (ARGONAUTE 6)	-	-	-	-
AT3G42791.1	-0.712541	transposable element gene	-	-	-	-
AT2G33230.1	-0.710323	flavin-containing monooxygenase, putative / FMO, putative	-	-	-	-
AT2G10040.1	-0.704903	transposable element gene	-	-	-	-
AT5G35900.1	-0.686706	LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35)	-	-	-	-
AT2G43090.1	-0.681866	aconitase C-terminal domain-containing protein	OMAT2P011805	-	-	-
AT5G26160.1	-0.67773	unknown protein	OMAT5P008890	-	-	-

Get whole results

Over-Representation Analysis Result

	p-value	<= 2.81e-07	:20 terms with high significance
2.81e-07 <	p-value	<= 8.76e-06	:With considering multiple testing correction; p <= 1.00e-02 / 1142
8.76e-06 <	p-value	<= 1.00e-02

Type of term (*1)	Depth of the term in ontology tree	ID/Term	Description	Number of genes	Over-Representative rate (*2)	p-value (*3)	PosMed p-value (*4) (Link to PosMed)	Found on gene annotation
B	5	GO:0006464	protein modification process	20/200	1.92	1.83e-03	-	no
B	4	GO:0043412	macromolecule modification	20/200	1.76	4.95e-03	-	no
B	3	GO:0042221	response to chemical stimulus	20/200	1.75	5.25e-03	-	no
B	4	GO:0006952	defense response	10/200	2.20	6.39e-03	-	no
B	5	GO:0006796	phosphate metabolic process	13/200	1.96	7.20e-03	-	no
B	4	GO:0006793	phosphorus metabolic process	13/200	1.96	7.26e-03	-	no
B	4	GO:0010033	response to organic substance	13/200	1.94	7.65e-03	-	no

C	4	GO:0005886	plasma membrane	23/200	1.86	1.49e-03	-	no

M	5	GO:0016301	kinase activity	16/200	1.99	3.12e-03	-	no
M	3	GO:0016740	transferase activity	27/200	1.65	3.63e-03	-	no
M	3	GO:0016787	hydrolase activity	26/200	1.66	3.78e-03	-	no
M	5	GO:0016773	phosphotransferase activity, alcohol group as acceptor	13/200	2.09	4.05e-03	-	no
M	4	GO:0016772	transferase activity, transferring phosphorus-containing groups	17/200	1.85	5.10e-03	-	no

PS	3	PO:0009005	root	137/200	1.52	5.44e-12	-	yes
PS	4	PO:0006345	pollen tube	66/200	2.27	1.30e-11	-	yes
PS	5	PO:0009028	microsporophyll	130/200	1.55	1.39e-11	-	yes
PS	4	PO:0009026	sporophyll	135/200	1.50	4.03e-11	-	yes
PS	3	PO:0020091	male gametophyte	126/200	1.52	2.54e-10	-	yes
PS	5	PO:0008037	seedling	131/200	1.48	3.49e-10	-	yes
PS	4	PO:0020030	cotyledon	115/200	1.57	7.11e-10	-	yes
PS	4	PO:0009025	leaf	133/200	1.45	1.50e-09	-	yes
PS	3	PO:0006001	phyllome	142/200	1.38	4.08e-09	-	yes
PS	5	PO:0020039	leaf lamina	120/200	1.46	2.80e-08	-	yes
PS	4	PO:0009047	stem	121/200	1.43	6.04e-08	-	yes
PS	4	PO:0009009	embryo	132/200	1.37	1.49e-07	-	yes
PS	3	PO:0009006	shoot	143/200	1.32	1.94e-07	-	yes
PS	3	PO:0009031	sepal	127/200	1.37	2.81e-07	-	yes
PS	5	PO:0009046	flower	138/200	1.33	3.47e-07	-	yes
PS	3	PO:0009010	seed	132/200	1.35	3.62e-07	-	yes
PS	4	PO:0009001	fruit	132/200	1.34	5.24e-07	-	yes
PS	3	PO:0006342	infructescence	132/200	1.34	5.24e-07	-	yes
PS	4	PO:0009049	inflorescence	138/200	1.32	5.42e-07	-	yes
PS	5	PO:0009027	megasporophyll	115/200	1.37	3.48e-06	-	yes
PS	5	PO:0008034	leaf whorl	125/200	1.33	4.47e-06	-	yes
PS	4	PO:0008033	phyllome whorl	125/200	1.33	4.47e-06	-	yes
PS	4	PO:0000230	inflorescence meristem	108/200	1.39	4.97e-06	-	yes
PS	3	PO:0009013	meristem	109/200	1.36	1.53e-05	-	yes
PS	5	PO:0020038	petiole	103/200	1.35	4.07e-05	-	yes
PS	3	PO:0009032	petal	114/200	1.30	6.67e-05	-	yes
PS	4	PO:0000037	shoot apex	108/200	1.26	6.92e-04	-	yes
PS	5	PO:0000013	cauline leaf	98/200	1.27	1.10e-03	-	yes
PS	5	PO:0009052	pedicel	100/200	1.23	2.99e-03	-	no

PG	3	PO:0007134	A vegetative growth	127/200	1.50	5.26e-10	-	yes
PG	5	PO:0007133	leaf production	126/200	1.50	7.53e-10	-	yes
PG	4	PO:0007112	1 main shoot growth	126/200	1.50	7.65e-10	-	yes
PG	3	PO:0007615	flower development stages	143/200	1.37	1.02e-08	-	yes
PG	4	PO:0007600	3 floral organ development stages	140/200	1.37	1.34e-08	-	yes
PG	4	PO:0007616	4 anthesis	133/200	1.37	8.87e-08	-	yes
PG	5	PO:0007605	androecium developmental stages	56/200	1.91	3.19e-07	-	yes
PG	5	PO:0007604	corolla developmental stages	132/200	1.34	6.86e-07	-	yes
PG	4	PO:0001054	4 leaf senescence stage	99/200	1.29	5.70e-04	-	yes
PG	3	PO:0001050	leaf development stages	99/200	1.29	5.82e-04	-	yes

KW	0	terminal	-	36/200	1.87	8.37e-05	6.83E-16	no
KW	0	response	-	34/200	1.90	9.73e-05	-	no
KW	0	plasma	-	23/200	2.01	5.12e-04	-	no
KW	0	threonine	-	16/200	2.13	1.50e-03	-	no
KW	0	gametophyte	-	10/200	2.55	2.12e-03	-	no
KW	0	stress	-	11/200	2.34	2.84e-03	-	no
KW	0	hydrolase	-	15/200	2.06	2.86e-03	-	no
KW	0	ipr000719	-	13/200	2.09	4.19e-03	-	no
KW	0	ipr011009	-	13/200	2.01	5.76e-03	-	no
KW	0	catalytic	-	18/200	1.77	6.72e-03	-	no
KW	0	ipr017442	-	11/200	2.09	7.04e-03	-	no
KW	0	serine	-	16/200	1.80	8.42e-03	3.52E-16	no

(*1)	[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2)	([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3)	P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4)	PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.

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