OMAT2P110070http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u201100700000i
Other supporting information
| Gene Model | |
 | |
| Correlation Plot | |
 | |
Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT3P015710 | 0.909227 | - | AT3G56330 | N2,N2-dimethylguanosine tRNA methyltransferase family protein | - | - |
| OMAT3P004770 | 0.898174 | - | AT3G13470 | chaperonin, putative | - | - |
| OMAT2P004090 | 0.867011 | - | AT2G21790 | RNR1 (RIBONUCLEOTIDE REDUCTASE 1) | - | - |
| OMAT4P106610 | 0.86019 | - | AT4G24670 | TAR2 (TRYPTOPHAN AMINOTRANSFERASE RELATED 2) | - | - |
| OMAT3P100500 | 0.857179 | - | AT3G02110 | scpl25 (serine carboxypeptidase-like 25) | - | - |
| OMAT1P104710 | 0.856973 | - | AT1G14440 | AtHB31 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31) | - | - |
| OMAT5P116440 | 0.85447 | - | AT5G61130 | PDCB1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1) | - | - |
| OMAT3P005760 | 0.851338 | - | AT3G15680 | zinc finger (Ran-binding) family protein | - | - |
| OMAT1P023770 | 0.850039 | - | AT1G79560 | FTSH12 (FTSH PROTEASE 12) | - | - |
| OMAT2P006220 | 0.84696 | - | AT2G28000 | CPN60A (CHAPERONIN-60ALPHA) | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT3P004330 | -0.776768 | - | AT3G12360 | ITN1 (INCREASED TOLERANCE TO NACL) | - | - |
| OMAT3P004740 | -0.774706 | - | AT3G13430 | zinc finger (C3HC4-type RING finger) family protein | - | - |
| OMAT5P109590 | -0.755152 | - | AT5G40470 | FUNCTIONS IN: molecular_function unknown | - | - |
| OMAT1P104210 | -0.749654 | - | AT1G13195 | zinc finger (C3HC4-type RING finger) family protein | - | - |
| OMAT1P110670 | -0.73401 | - | AT1G34220 | unknown protein | - | - |
| OMAT3P104070 | -0.719479 | - | AT3G12400 | ELC | - | - |
| OMAT2P009210 | -0.714618 | - | AT2G36220 | unknown protein | - | - |
| OMAT4P106750 | -0.71044 | - | AT4G24990 | ATGP4 | - | - |
| OMAT1P102160 | -0.704083 | - | AT1G07310 | C2 domain-containing protein | - | - |
| OMAT2P108030 | -0.702888 | - | AT2G35680 | dual specificity protein phosphatase family protein | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 2.90e-37 | :20 terms with high significance | |
| 2.90e-37 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0044238 | primary metabolic process | 89/201 | 1.79 | 4.87e-10 | - | no |
| B | 5 | GO:0006412 | translation | 23/201 | 3.16 | 3.41e-07 | - | no |
| B | 3 | GO:0043170 | macromolecule metabolic process | 68/201 | 1.75 | 3.88e-07 | - | no |
| B | 5 | GO:0006259 | DNA metabolic process | 11/201 | 5.43 | 1.07e-06 | - | no |
| B | 4 | GO:0044249 | cellular biosynthetic process | 53/201 | 1.87 | 1.36e-06 | - | no |
| B | 3 | GO:0044237 | cellular metabolic process | 76/201 | 1.60 | 2.21e-06 | - | no |
| B | 3 | GO:0009790 | embryonic development | 12/201 | 4.52 | 3.11e-06 | - | no |
| B | 3 | GO:0009058 | biosynthetic process | 53/201 | 1.81 | 3.89e-06 | - | no |
| B | 4 | GO:0019538 | protein metabolic process | 45/201 | 1.94 | 3.91e-06 | - | no |
| B | 5 | GO:0010038 | response to metal ion | 11/201 | 4.56 | 6.41e-06 | - | no |
| B | 4 | GO:0044260 | cellular macromolecule metabolic process | 59/201 | 1.67 | 1.43e-05 | - | no |
| B | 4 | GO:0010035 | response to inorganic substance | 11/201 | 3.84 | 3.51e-05 | - | no |
| B | 5 | GO:0044267 | cellular protein metabolic process | 38/201 | 1.85 | 6.29e-05 | - | no |
| B | 5 | GO:0034645 | cellular macromolecule biosynthetic process | 39/201 | 1.80 | 9.78e-05 | - | no |
| B | 4 | GO:0009059 | macromolecule biosynthetic process | 39/201 | 1.79 | 1.04e-04 | - | no |
| B | 3 | GO:0006996 | organelle organization | 10/201 | 2.98 | 6.04e-04 | - | no |
| B | 4 | GO:0048608 | reproductive structure development | 12/201 | 2.45 | 1.40e-03 | - | no |
| B | 4 | GO:0034641 | cellular nitrogen compound metabolic process | 32/201 | 1.64 | 1.98e-03 | - | no |
| B | 4 | GO:0010467 | gene expression | 33/201 | 1.61 | 2.17e-03 | 1.78E-15 | no |
| B | 4 | GO:0044283 | small molecule biosynthetic process | 11/201 | 2.41 | 2.28e-03 | - | no |
| B | 3 | GO:0007275 | multicellular organismal development | 20/201 | 1.87 | 2.46e-03 | - | no |
| B | 3 | GO:0006807 | nitrogen compound metabolic process | 32/201 | 1.60 | 2.71e-03 | - | no |
| B | 3 | GO:0003006 | reproductive developmental process | 12/201 | 2.17 | 3.98e-03 | - | no |
| B | 3 | GO:0048856 | anatomical structure development | 17/201 | 1.89 | 4.18e-03 | - | yes |
| B | 3 | GO:0042221 | response to chemical stimulus | 20/201 | 1.75 | 5.55e-03 | - | no |
| B | 3 | GO:0009791 | post-embryonic development | 12/201 | 2.02 | 7.14e-03 | - | no |
| B | 3 | GO:0022414 | reproductive process | 12/201 | 1.98 | 8.24e-03 | - | no |
| B | 3 | GO:0044281 | small molecule metabolic process | 16/201 | 1.77 | 9.52e-03 | - | no |
| C | 3 | GO:0043229 | intracellular organelle | 121/201 | 2.61 | 2.94e-30 | - | no |
| C | 4 | GO:0044444 | cytoplasmic part | 103/201 | 2.95 | 9.26e-29 | - | no |
| C | 4 | GO:0005737 | cytoplasm | 106/201 | 2.82 | 4.41e-28 | - | no |
| C | 3 | GO:0044424 | intracellular part | 123/201 | 2.40 | 2.07e-27 | - | no |
| C | 3 | GO:0044464 | cell part | 165/201 | 1.79 | 3.16e-27 | 2.86E-16 | yes |
| C | 3 | GO:0005622 | intracellular | 124/201 | 2.32 | 3.22e-26 | - | no |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 109/201 | 2.47 | 4.05e-24 | - | no |
| C | 3 | GO:0043227 | membrane-bounded organelle | 109/201 | 2.47 | 4.10e-24 | - | no |
| C | 3 | GO:0043228 | non-membrane-bounded organelle | 41/201 | 6.84 | 1.49e-23 | - | no |
| C | 4 | GO:0043232 | intracellular non-membrane-bounded organelle | 41/201 | 6.84 | 1.49e-23 | - | no |
| C | 3 | GO:0044446 | intracellular organelle part | 60/201 | 4.16 | 7.86e-23 | - | no |
| C | 3 | GO:0044422 | organelle part | 60/201 | 4.16 | 8.21e-23 | - | no |
| C | 5 | GO:0009536 | plastid | 67/201 | 3.61 | 3.89e-22 | - | no |
| C | 5 | GO:0022626 | cytosolic ribosome | 23/201 | 12.44 | 9.28e-20 | - | no |
| C | 4 | GO:0005840 | ribosome | 26/201 | 10.10 | 1.04e-19 | - | no |
| C | 4 | GO:0033279 | ribosomal subunit | 21/201 | 12.87 | 1.49e-18 | - | no |
| C | 5 | GO:0044445 | cytosolic part | 20/201 | 13.29 | 4.59e-18 | - | no |
| C | 3 | GO:0030529 | ribonucleoprotein complex | 27/201 | 7.70 | 2.59e-17 | - | no |
| C | 5 | GO:0005829 | cytosol | 25/201 | 6.01 | 1.19e-13 | - | no |
| C | 5 | GO:0015935 | small ribosomal subunit | 12/201 | 16.97 | 3.47e-13 | - | no |
| C | 4 | GO:0005618 | cell wall | 20/201 | 5.99 | 2.79e-11 | 1.18E-16 | no |
| C | 3 | GO:0030312 | external encapsulating structure | 20/201 | 5.95 | 3.19e-11 | - | no |
| C | 4 | GO:0005886 | plasma membrane | 39/201 | 3.13 | 4.59e-11 | - | no |
| C | 4 | GO:0070013 | intracellular organelle lumen | 18/201 | 6.60 | 4.59e-11 | - | no |
| C | 3 | GO:0043233 | organelle lumen | 18/201 | 6.59 | 4.77e-11 | - | no |
| C | 5 | GO:0009532 | plastid stroma | 17/201 | 6.84 | 8.12e-11 | - | no |
| C | 4 | GO:0044428 | nuclear part | 18/201 | 5.39 | 1.39e-09 | - | no |
| C | 4 | GO:0044435 | plastid part | 23/201 | 4.02 | 3.67e-09 | - | no |
| C | 5 | GO:0031981 | nuclear lumen | 15/201 | 6.17 | 3.72e-09 | - | no |
| C | 3 | GO:0016020 | membrane | 58/201 | 2.11 | 5.59e-09 | - | no |
| C | 5 | GO:0005694 | chromosome | 10/201 | 10.03 | 5.84e-09 | - | no |
| C | 5 | GO:0005730 | nucleolus | 11/201 | 6.39 | 1.92e-07 | - | no |
| C | 5 | GO:0044434 | chloroplast part | 20/201 | 3.59 | 2.19e-07 | - | no |
| C | 5 | GO:0005634 | nucleus | 37/201 | 2.35 | 3.14e-07 | - | no |
| C | 5 | GO:0005739 | mitochondrion | 18/201 | 2.80 | 2.75e-05 | - | no |
| C | 5 | GO:0005773 | vacuole | 11/201 | 3.17 | 2.12e-04 | 3.17E-13 | no |
| M | 3 | GO:0003735 | structural constituent of ribosome | 23/201 | 10.57 | 4.00e-18 | - | no |
| M | 5 | GO:0032555 | purine ribonucleotide binding | 22/201 | 2.23 | 1.49e-04 | - | no |
| M | 4 | GO:0032553 | ribonucleotide binding | 22/201 | 2.23 | 1.49e-04 | - | no |
| M | 3 | GO:0000166 | nucleotide binding | 27/201 | 2.03 | 1.50e-04 | - | no |
| M | 4 | GO:0017076 | purine nucleotide binding | 22/201 | 2.11 | 3.31e-04 | - | no |
| M | 3 | GO:0016787 | hydrolase activity | 27/201 | 1.72 | 2.04e-03 | - | no |
| M | 4 | GO:0016817 | hydrolase activity, acting on acid anhydrides | 11/201 | 2.44 | 2.09e-03 | - | no |
| M | 5 | GO:0030554 | adenyl nucleotide binding | 17/201 | 1.87 | 4.66e-03 | - | no |
| M | 4 | GO:0001883 | purine nucleoside binding | 17/201 | 1.87 | 4.66e-03 | - | no |
| M | 3 | GO:0001882 | nucleoside binding | 17/201 | 1.87 | 4.79e-03 | - | no |
| M | 5 | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 10/201 | 2.24 | 5.63e-03 | - | no |
| PS | 5 | PO:0009052 | pedicel | 178/201 | 2.18 | 8.50e-47 | - | yes |
| PS | 5 | PO:0020038 | petiole | 172/201 | 2.25 | 3.41e-45 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 180/201 | 2.08 | 7.41e-45 | - | yes |
| PS | 4 | PO:0009025 | leaf | 181/201 | 1.96 | 4.27e-41 | 1.69E-11 | yes |
| PS | 5 | PO:0020039 | leaf lamina | 173/201 | 2.09 | 9.33e-41 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 173/201 | 2.05 | 1.66e-39 | - | yes |
| PS | 3 | PO:0009032 | petal | 176/201 | 2.00 | 1.88e-39 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 186/201 | 1.80 | 2.20e-38 | - | yes |
| PS | 3 | PO:0009031 | sepal | 178/201 | 1.92 | 9.66e-38 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 165/201 | 2.13 | 1.18e-37 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 179/201 | 1.89 | 2.90e-37 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 179/201 | 1.89 | 2.90e-37 | - | yes |
| PS | 4 | PO:0009009 | embryo | 180/201 | 1.85 | 1.59e-36 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 174/201 | 1.92 | 9.59e-36 | - | yes |
| PS | 3 | PO:0009010 | seed | 180/201 | 1.83 | 1.21e-35 | - | yes |
| PS | 4 | PO:0009001 | fruit | 180/201 | 1.82 | 2.83e-35 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 180/201 | 1.82 | 2.83e-35 | - | yes |
| PS | 3 | PO:0009006 | shoot | 186/201 | 1.70 | 4.13e-34 | 1.15E-17 | yes |
| PS | 5 | PO:0009046 | flower | 181/201 | 1.73 | 2.98e-32 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 181/201 | 1.72 | 7.90e-32 | - | yes |
| PS | 5 | PO:0008037 | seedling | 168/201 | 1.89 | 8.49e-32 | 1.69E-11 | yes |
| PS | 5 | PO:0009028 | microsporophyll | 161/201 | 1.91 | 2.31e-29 | - | yes |
| PS | 3 | PO:0009013 | meristem | 157/201 | 1.94 | 8.04e-29 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 150/201 | 2.03 | 1.13e-28 | - | yes |
| PS | 3 | PO:0009005 | root | 163/201 | 1.80 | 1.01e-26 | 1.43E-16 | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 150/201 | 1.92 | 1.12e-25 | - | yes |
| PS | 4 | PO:0009047 | stem | 151/201 | 1.78 | 4.50e-22 | - | yes |
| PS | 5 | PO:0006016 | leaf epidermis | 45/201 | 4.03 | 1.40e-16 | - | no |
| PS | 5 | PO:0006035 | shoot epidermis | 45/201 | 4.00 | 1.82e-16 | - | no |
| PS | 4 | PO:0000293 | guard cell | 44/201 | 4.07 | 2.14e-16 | - | no |
| PS | 4 | PO:0000351 | guard mother cell | 44/201 | 4.05 | 2.52e-16 | - | no |
| PS | 3 | PO:0000070 | meristemoid | 44/201 | 4.04 | 2.68e-16 | - | no |
| PS | 5 | PO:0000349 | epidermal initial | 44/201 | 3.88 | 1.20e-15 | - | no |
| PS | 4 | PO:0004011 | initial cell | 44/201 | 3.86 | 1.51e-15 | - | no |
| PS | 3 | PO:0004010 | meristematic cell | 44/201 | 3.85 | 1.60e-15 | - | no |
| PS | 4 | PO:0005679 | epidermis | 46/201 | 3.70 | 1.61e-15 | - | no |
| PS | 3 | PO:0009014 | dermal tissue | 46/201 | 3.69 | 1.64e-15 | - | no |
| PS | 3 | PO:0004013 | epidermal cell | 45/201 | 3.75 | 1.90e-15 | - | no |
| PS | 3 | PO:0020091 | male gametophyte | 135/201 | 1.62 | 5.13e-14 | - | yes |
| PS | 3 | PO:0000084 | sperm cell | 48/201 | 1.47 | 1.84e-03 | - | no |
| PS | 3 | PO:0020097 | generative cell | 48/201 | 1.47 | 1.84e-03 | - | no |
| PG | 5 | PO:0001081 | F mature embryo stage | 178/201 | 2.23 | 2.26e-48 | - | no |
| PG | 5 | PO:0001185 | C globular stage | 178/201 | 2.16 | 3.84e-46 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 178/201 | 2.15 | 7.28e-46 | - | no |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 178/201 | 2.13 | 2.56e-45 | - | no |
| PG | 3 | PO:0001170 | seed development stages | 180/201 | 1.98 | 3.00e-41 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 179/201 | 1.98 | 1.57e-40 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 165/201 | 2.13 | 6.27e-38 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 165/201 | 2.13 | 6.79e-38 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 183/201 | 1.79 | 1.05e-35 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 179/201 | 1.84 | 2.67e-35 | 1.69E-11 | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 168/201 | 1.97 | 2.11e-34 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 179/201 | 1.80 | 4.76e-34 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 167/201 | 1.98 | 5.38e-34 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 167/201 | 1.97 | 5.55e-34 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 183/201 | 1.74 | 1.06e-33 | - | yes |
| KW | 0 | chloroplast | - | 62/201 | 3.49 | 1.14e-19 | - | no |
| KW | 0 | ribosome | - | 24/201 | 9.04 | 3.22e-17 | - | no |
| KW | 0 | ribosomal | - | 25/201 | 8.24 | 7.17e-17 | - | no |
| KW | 0 | constituent | - | 23/201 | 8.17 | 1.36e-15 | - | no |
| KW | 0 | structural | - | 25/201 | 7.09 | 2.53e-15 | - | no |
| KW | 0 | translation | - | 29/201 | 5.82 | 3.47e-15 | - | no |
| KW | 0 | replication | - | 11/201 | 13.48 | 4.13e-11 | - | no |
| KW | 0 | cytosolic | - | 16/201 | 7.44 | 7.31e-11 | - | no |
| KW | 0 | subunit | - | 26/201 | 3.53 | 6.47e-09 | - | no |
| KW | 0 | components | - | 12/201 | 7.35 | 1.22e-08 | 1.69E-11 | no |
| KW | 0 | small | - | 18/201 | 4.44 | 3.04e-08 | - | no |
| KW | 0 | plasma | - | 31/201 | 2.69 | 1.55e-07 | - | no |
| KW | 0 | stroma | - | 11/201 | 5.87 | 4.72e-07 | - | no |
| KW | 0 | defective | - | 12/201 | 4.88 | 1.36e-06 | - | no |
| KW | 0 | nuclear | - | 12/201 | 3.89 | 1.57e-05 | - | no |
| KW | 0 | membrane | - | 47/201 | 1.76 | 3.33e-05 | - | no |
| KW | 0 | conserved | - | 29/201 | 2.13 | 3.81e-05 | - | no |
| KW | 0 | pentatricopeptide | - | 11/201 | 3.77 | 4.21e-05 | - | no |
| KW | 0 | ipr002885 | - | 10/201 | 3.55 | 1.38e-04 | - | no |
| KW | 0 | catalytic | - | 22/201 | 2.15 | 2.46e-04 | - | no |
| KW | 0 | terminal | - | 33/201 | 1.70 | 8.65e-04 | - | yes |
| KW | 0 | alpha | - | 16/201 | 2.18 | 1.18e-03 | 0 | yes |
| KW | 0 | biosynthetic | - | 15/201 | 2.09 | 2.45e-03 | - | no |
| KW | 0 | subgroup | - | 10/201 | 2.45 | 2.84e-03 | - | no |
| KW | 0 | hydrolase | - | 15/201 | 2.05 | 3.00e-03 | - | no |
| KW | 0 | process | - | 32/201 | 1.55 | 4.44e-03 | - | no |
| KW | 0 | nucleus | - | 22/201 | 1.70 | 5.51e-03 | - | no |
| KW | 0 | nucleic | - | 13/201 | 1.98 | 6.60e-03 | - | no |
| KW | 0 | dependent | - | 22/201 | 1.63 | 8.51e-03 | 3.17E-13 | no |
| KW | 0 | putative | - | 34/201 | 1.47 | 8.64e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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