OMAT3P001330http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u300013300000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P116910 | 0.874367 | - | AT1G67930 | Golgi transport complex protein-related | - | - |
| OMAT3P011000 | 0.872635 | - | AT3G29320 | glucan phosphorylase, putative | - | - |
| OMAT3P012260 | 0.866638 | - | AT3G47460 | ATSMC2 | AT3G47470 | LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4) |
| OMAT3P110010 | 0.857668 | - | AT3G44610 | protein kinase family protein | - | - |
| OMAT5P110650 | 0.855652 | - | AT5G43870 | phosphoinositide binding | - | - |
| OMAT2P012140 | 0.847283 | - | AT2G44060 | late embryogenesis abundant family protein / LEA family protein | - | - |
| OMAT3P007910 | 0.846248 | - | AT3G20790 | oxidoreductase family protein | - | - |
| OMAT2P107030 | 0.845756 | - | AT2G32690 | GRP23 (GLYCINE-RICH PROTEIN 23) | - | - |
| OMAT2P108170 | 0.843652 | - | AT2G36050 | OFP15 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15) | - | - |
| OMAT3P109840 | 0.84005 | - | AT3G43610 | tubulin binding | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT5P102060 | -0.81365 | - | AT5G07470 | PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3) | - | - |
| OMAT5P116780 | -0.795523 | - | AT5G62200 | embryo-specific protein-related | - | - |
| OMAT3P108010 | -0.792365 | - | AT3G24180 | catalytic/ glucosylceramidase | - | - |
| OMAT2P002270 | -0.78742 | - | AT2G16595 | FUNCTIONS IN: molecular_function unknown | - | - |
| OMAT5P108910 | -0.763993 | - | AT5G37480,AT5G37485 | [AT5G37480]unknown protein, [AT5G37485]other RNA | - | - |
| OMAT1P101300 | -0.760596 | - | AT1G04985 | unknown protein | - | - |
| OMAT3P009370 | -0.757682 | - | AT3G24927 | pseudogene of unknown protein | - | - |
| OMAT2P007190 | -0.757486 | - | AT2G30530 | unknown protein | - | - |
| OMAT1P109650 | -0.754334 | - | AT1G30500 | NF-YA7 (NUCLEAR FACTOR Y, SUBUNIT A7) | - | - |
| OMAT4P102300 | -0.753262 | - | AT4G11600 | ATGPX6 (GLUTATHIONE PEROXIDASE 6) | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 5.29e-38 | :20 terms with high significance | |
| 5.29e-38 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0006629 | lipid metabolic process | 16/200 | 3.68 | 2.05e-06 | - | no |
| B | 4 | GO:0044255 | cellular lipid metabolic process | 12/200 | 4.46 | 3.58e-06 | - | no |
| B | 3 | GO:0009628 | response to abiotic stimulus | 20/200 | 2.70 | 1.89e-05 | - | no |
| B | 3 | GO:0042221 | response to chemical stimulus | 26/200 | 2.28 | 2.90e-05 | - | no |
| B | 4 | GO:0010033 | response to organic substance | 18/200 | 2.69 | 4.65e-05 | - | no |
| B | 3 | GO:0009719 | response to endogenous stimulus | 15/200 | 2.91 | 6.82e-05 | - | no |
| B | 4 | GO:0005975 | carbohydrate metabolic process | 15/200 | 2.88 | 7.70e-05 | - | no |
| B | 3 | GO:0044281 | small molecule metabolic process | 21/200 | 2.34 | 1.04e-04 | - | no |
| B | 4 | GO:0044262 | cellular carbohydrate metabolic process | 10/200 | 3.23 | 3.06e-04 | - | no |
| B | 4 | GO:0009725 | response to hormone stimulus | 13/200 | 2.75 | 3.14e-04 | - | no |
| B | 3 | GO:0006996 | organelle organization | 10/200 | 3.00 | 5.80e-04 | - | no |
| B | 3 | GO:0009653 | anatomical structure morphogenesis | 10/200 | 2.97 | 6.15e-04 | - | no |
| B | 4 | GO:0044283 | small molecule biosynthetic process | 12/200 | 2.64 | 7.02e-04 | - | no |
| B | 5 | GO:0043436 | oxoacid metabolic process | 11/200 | 2.50 | 1.69e-03 | - | no |
| B | 3 | GO:0048856 | anatomical structure development | 18/200 | 2.01 | 1.70e-03 | - | no |
| B | 4 | GO:0006082 | organic acid metabolic process | 11/200 | 2.49 | 1.73e-03 | - | no |
| B | 4 | GO:0042180 | cellular ketone metabolic process | 11/200 | 2.45 | 1.98e-03 | - | no |
| B | 3 | GO:0006810 | transport | 19/200 | 1.85 | 3.41e-03 | - | no |
| B | 3 | GO:0051234 | establishment of localization | 19/200 | 1.85 | 3.52e-03 | - | no |
| C | 3 | GO:0044464 | cell part | 147/200 | 1.61 | 3.75e-16 | - | no |
| C | 5 | GO:0044434 | chloroplast part | 21/200 | 3.79 | 4.53e-08 | - | no |
| C | 3 | GO:0044424 | intracellular part | 85/200 | 1.67 | 4.91e-08 | - | no |
| C | 4 | GO:0044435 | plastid part | 21/200 | 3.69 | 7.21e-08 | - | no |
| C | 3 | GO:0005622 | intracellular | 87/200 | 1.63 | 8.10e-08 | - | no |
| C | 3 | GO:0016020 | membrane | 55/200 | 2.01 | 8.12e-08 | - | no |
| C | 3 | GO:0044446 | intracellular organelle part | 36/200 | 2.51 | 9.20e-08 | - | no |
| C | 3 | GO:0044422 | organelle part | 36/200 | 2.51 | 9.39e-08 | - | no |
| C | 4 | GO:0044444 | cytoplasmic part | 63/200 | 1.81 | 3.22e-07 | - | no |
| C | 3 | GO:0043229 | intracellular organelle | 77/200 | 1.67 | 3.26e-07 | - | no |
| C | 3 | GO:0048046 | apoplast | 11/200 | 5.58 | 8.11e-07 | - | no |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 73/200 | 1.66 | 9.05e-07 | - | no |
| C | 3 | GO:0043227 | membrane-bounded organelle | 73/200 | 1.66 | 9.10e-07 | - | no |
| C | 5 | GO:0009536 | plastid | 40/200 | 2.17 | 9.16e-07 | - | no |
| C | 5 | GO:0009532 | plastid stroma | 12/200 | 4.85 | 1.43e-06 | - | no |
| C | 4 | GO:0005737 | cytoplasm | 64/200 | 1.71 | 2.17e-06 | - | no |
| C | 4 | GO:0005886 | plasma membrane | 28/200 | 2.26 | 1.76e-05 | - | no |
| C | 5 | GO:0009526 | plastid envelope | 11/200 | 4.00 | 2.35e-05 | - | no |
| C | 3 | GO:0043234 | protein complex | 18/200 | 2.75 | 3.47e-05 | - | no |
| C | 4 | GO:0009579 | thylakoid | 10/200 | 4.02 | 4.63e-05 | - | no |
| C | 4 | GO:0031967 | organelle envelope | 12/200 | 2.88 | 3.15e-04 | - | no |
| C | 3 | GO:0031975 | envelope | 12/200 | 2.88 | 3.15e-04 | - | no |
| C | 3 | GO:0043228 | non-membrane-bounded organelle | 15/200 | 2.52 | 3.52e-04 | - | no |
| C | 4 | GO:0043232 | intracellular non-membrane-bounded organelle | 15/200 | 2.52 | 3.52e-04 | - | no |
| M | 3 | GO:0016787 | hydrolase activity | 30/200 | 1.92 | 1.91e-04 | - | no |
| M | 3 | GO:0016740 | transferase activity | 31/200 | 1.90 | 1.92e-04 | - | no |
| M | 5 | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 12/200 | 2.70 | 5.83e-04 | - | no |
| M | 4 | GO:0016817 | hydrolase activity, acting on acid anhydrides | 12/200 | 2.67 | 6.36e-04 | - | no |
| PS | 5 | PO:0009052 | pedicel | 177/200 | 2.18 | 1.88e-46 | - | yes |
| PS | 3 | PO:0009032 | petal | 181/200 | 2.07 | 2.25e-45 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 176/200 | 2.14 | 1.98e-44 | - | yes |
| PS | 5 | PO:0020038 | petiole | 170/200 | 2.23 | 7.62e-44 | - | yes |
| PS | 3 | PO:0009031 | sepal | 182/200 | 1.97 | 1.31e-42 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 169/200 | 2.19 | 6.75e-42 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 176/200 | 2.05 | 2.06e-41 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 173/200 | 2.06 | 3.80e-40 | - | yes |
| PS | 4 | PO:0009025 | leaf | 179/200 | 1.95 | 9.15e-40 | - | yes |
| PS | 4 | PO:0009009 | embryo | 181/200 | 1.87 | 2.91e-38 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 185/200 | 1.80 | 4.00e-38 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 179/200 | 1.90 | 5.67e-38 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 179/200 | 1.90 | 5.67e-38 | - | yes |
| PS | 3 | PO:0009010 | seed | 181/200 | 1.85 | 2.29e-37 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 175/200 | 1.94 | 2.56e-37 | - | yes |
| PS | 4 | PO:0009001 | fruit | 181/200 | 1.84 | 5.45e-37 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 181/200 | 1.84 | 5.45e-37 | - | yes |
| PS | 5 | PO:0008037 | seedling | 173/200 | 1.96 | 9.21e-37 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 168/200 | 2.00 | 1.28e-35 | - | yes |
| PS | 5 | PO:0009046 | flower | 183/200 | 1.76 | 6.01e-35 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 183/200 | 1.75 | 1.64e-34 | - | yes |
| PS | 3 | PO:0009006 | shoot | 185/200 | 1.70 | 7.10e-34 | - | yes |
| PS | 3 | PO:0009013 | meristem | 162/200 | 2.02 | 3.39e-33 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 154/200 | 2.10 | 4.29e-32 | - | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 157/200 | 2.02 | 3.38e-31 | - | yes |
| PS | 4 | PO:0009047 | stem | 154/200 | 1.83 | 1.98e-24 | 2.00E-21 | yes |
| PS | 3 | PO:0020091 | male gametophyte | 152/200 | 1.83 | 5.39e-24 | - | yes |
| PS | 3 | PO:0009005 | root | 147/200 | 1.63 | 6.45e-17 | - | yes |
| PS | 5 | PO:0006035 | shoot epidermis | 38/200 | 3.39 | 7.55e-12 | - | no |
| PS | 4 | PO:0005679 | epidermis | 40/200 | 3.23 | 9.68e-12 | - | no |
| PS | 3 | PO:0009014 | dermal tissue | 40/200 | 3.23 | 9.83e-12 | - | no |
| PS | 5 | PO:0006016 | leaf epidermis | 37/200 | 3.33 | 2.56e-11 | - | no |
| PS | 5 | PO:0000349 | epidermal initial | 37/200 | 3.28 | 3.85e-11 | - | no |
| PS | 4 | PO:0000293 | guard cell | 36/200 | 3.35 | 4.10e-11 | - | no |
| PS | 4 | PO:0004011 | initial cell | 37/200 | 3.26 | 4.63e-11 | - | no |
| PS | 4 | PO:0000351 | guard mother cell | 36/200 | 3.33 | 4.65e-11 | - | no |
| PS | 3 | PO:0004010 | meristematic cell | 37/200 | 3.26 | 4.85e-11 | - | no |
| PS | 3 | PO:0000070 | meristemoid | 36/200 | 3.33 | 4.88e-11 | - | no |
| PS | 3 | PO:0004013 | epidermal cell | 38/200 | 3.19 | 4.94e-11 | - | no |
| PG | 5 | PO:0001081 | F mature embryo stage | 176/200 | 2.21 | 6.08e-47 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 178/200 | 2.17 | 7.06e-47 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 176/200 | 2.14 | 1.78e-44 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 176/200 | 2.12 | 6.15e-44 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 180/200 | 2.00 | 2.62e-42 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 180/200 | 1.99 | 5.40e-42 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 168/200 | 2.18 | 3.09e-41 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 168/200 | 2.18 | 3.36e-41 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 181/200 | 1.87 | 5.29e-38 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 170/200 | 2.02 | 3.33e-37 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 170/200 | 2.02 | 3.44e-37 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 170/200 | 2.01 | 9.67e-37 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 181/200 | 1.83 | 1.03e-36 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 182/200 | 1.79 | 1.89e-35 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 182/200 | 1.74 | 1.86e-33 | - | yes |
| KW | 0 | chloroplast | - | 40/200 | 2.26 | 2.86e-07 | 4.00E-31 | no |
| KW | 0 | membrane | - | 52/200 | 1.95 | 4.80e-07 | - | no |
| KW | 0 | apoplast | - | 10/200 | 5.96 | 1.14e-06 | - | no |
| KW | 0 | required | - | 11/200 | 5.02 | 2.39e-06 | - | no |
| KW | 0 | process | - | 41/200 | 2.00 | 5.02e-06 | - | yes |
| KW | 0 | envelope | - | 10/200 | 4.38 | 2.13e-05 | - | no |
| KW | 0 | specific | - | 12/200 | 3.51 | 4.45e-05 | - | no |
| KW | 0 | plasma | - | 25/200 | 2.18 | 8.36e-05 | - | no |
| KW | 0 | transport | - | 22/200 | 2.26 | 1.22e-04 | - | no |
| KW | 0 | hydrolase | - | 18/200 | 2.47 | 1.45e-04 | - | no |
| KW | 0 | transporter | - | 17/200 | 2.45 | 2.33e-04 | - | no |
| KW | 0 | processes | - | 10/200 | 3.30 | 2.59e-04 | - | no |
| KW | 0 | biosynthetic | - | 17/200 | 2.38 | 3.24e-04 | - | no |
| KW | 0 | complex | - | 19/200 | 2.24 | 3.47e-04 | - | no |
| KW | 0 | alpha | - | 17/200 | 2.33 | 4.14e-04 | - | no |
| KW | 0 | groups | - | 10/200 | 3.06 | 4.84e-04 | - | no |
| KW | 0 | metabolic | - | 23/200 | 2.00 | 5.28e-04 | - | yes |
| KW | 0 | transferring | - | 10/200 | 3.00 | 5.71e-04 | - | no |
| KW | 0 | catalytic | - | 21/200 | 2.07 | 5.72e-04 | - | yes |
| KW | 0 | region | - | 26/200 | 1.80 | 1.27e-03 | - | no |
| KW | 0 | encodes | - | 40/200 | 1.57 | 1.38e-03 | - | no |
| KW | 0 | stimulus | - | 11/200 | 2.55 | 1.41e-03 | - | no |
| KW | 0 | terminal | - | 32/200 | 1.66 | 1.57e-03 | - | no |
| KW | 0 | stress | - | 11/200 | 2.34 | 2.84e-03 | - | no |
| KW | 0 | transferase | - | 12/200 | 1.96 | 9.10e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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