OMAT3P014510http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u300145100000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT4P111560 | 0.990611 | - | AT4G38100 | unknown protein | - | - |
| OMAT3P106450 | 0.989848 | - | AT3G19508 | unknown protein | - | - |
| OMAT1P014600 | 0.989543 | - | AT1G52930 | brix domain-containing protein | - | - |
| OMAT4P109010 | 0.98945 | - | AT4G31810 | enoyl-CoA hydratase/isomerase family protein | - | - |
| OMAT3P000840 | 0.985589 | - | AtsnoR78-2,AtsnoR78-1 | [AtsnoR78-2]AtsnoR78-2, [AtsnoR78-1]AtsnoR78-1 | - | - |
| OMAT2P009860 | 0.985501 | - | AT2G37990 | ribosome biogenesis regulatory protein (RRS1) family protein | - | - |
| OMAT1P105460 | 0.985174 | - | AtsnoR34 | AtsnoR34 | - | - |
| OMAT3P015980 | 0.984675 | - | - | - | AT3G57150 | NAP57 (Arabidopsis thaliana homologue of NAP57) |
| OMAT1P014170 | 0.984142 | - | AT1G51380 | eukaryotic translation initiation factor 4A, putative / eIF-4A, putative | - | - |
| OMAT1P117790 | 0.984107 | - | AT1G70350 | unknown protein | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT4P104230 | -0.683153 | - | AT4G17170 | RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) | - | - |
| OMAT2P002180 | -0.668203 | - | AT2G16050 | FUNCTIONS IN: molecular_function unknown | - | - |
| OMAT3P112910 | -0.662218 | - | AT3G53990 | universal stress protein (USP) family protein | - | - |
| OMAT3P105790 | -0.662055 | - | - | - | AT3G17050 | transposable element gene |
| OMAT5P019730 | -0.66167 | - | AT5G64240 | AtMC3 (metacaspase 3) | - | - |
| OMAT3P000660 | -0.660823 | - | AT3G02470,AT3G02468 | [AT3G02470]SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE), [AT3G02468]CPuORF9 (Conserved peptide upstream open reading frame 9) | - | - |
| OMAT5P018380 | -0.657042 | - | AT5G60360 | AALP (Arabidopsis aleurain-like protease) | - | - |
| OMAT1P108460 | -0.654144 | - | AT1G27100 | FUNCTIONS IN: molecular_function unknown | - | - |
| OMAT5P019570 | -0.644094 | - | AT5G63800 | MUM2 (MUCILAGE-MODIFIED 2) | - | - |
| OMAT5P111240 | -0.638609 | - | AT5G45350 | proline-rich family protein | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.32e-10 | :20 terms with high significance | |
| 1.32e-10 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0042254 | ribosome biogenesis | 24/204 | 18.37 | 9.77e-25 | - | no |
| B | 3 | GO:0022613 | ribonucleoprotein complex biogenesis | 24/204 | 17.78 | 2.22e-24 | - | no |
| B | 5 | GO:0006364 | rRNA processing | 15/204 | 23.51 | 3.66e-18 | - | no |
| B | 5 | GO:0006396 | RNA processing | 23/204 | 10.19 | 9.37e-18 | - | no |
| B | 5 | GO:0009451 | RNA modification | 14/204 | 18.11 | 2.21e-15 | - | no |
| B | 4 | GO:0010467 | gene expression | 48/204 | 2.31 | 8.66e-09 | - | no |
| B | 5 | GO:0016070 | RNA metabolic process | 26/204 | 3.00 | 1.82e-07 | - | no |
| B | 5 | GO:0006412 | translation | 21/204 | 2.84 | 5.65e-06 | - | no |
| B | 5 | GO:0090304 | nucleic acid metabolic process | 30/204 | 1.96 | 1.39e-04 | - | no |
| B | 4 | GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 31/204 | 1.80 | 4.81e-04 | - | no |
| B | 4 | GO:0044260 | cellular macromolecule metabolic process | 52/204 | 1.45 | 1.77e-03 | - | no |
| B | 4 | GO:0034641 | cellular nitrogen compound metabolic process | 32/204 | 1.61 | 2.53e-03 | - | no |
| B | 3 | GO:0006807 | nitrogen compound metabolic process | 32/204 | 1.58 | 3.44e-03 | - | no |
| B | 3 | GO:0043170 | macromolecule metabolic process | 53/204 | 1.34 | 7.89e-03 | - | no |
| C | 3 | GO:0030529 | ribonucleoprotein complex | 31/204 | 8.71 | 3.35e-21 | - | no |
| C | 3 | GO:0043228 | non-membrane-bounded organelle | 35/204 | 5.76 | 7.57e-18 | - | no |
| C | 4 | GO:0043232 | intracellular non-membrane-bounded organelle | 35/204 | 5.76 | 7.57e-18 | - | no |
| C | 5 | GO:0005730 | nucleolus | 18/204 | 10.30 | 1.87e-14 | - | no |
| C | 4 | GO:0070013 | intracellular organelle lumen | 21/204 | 7.59 | 9.05e-14 | - | no |
| C | 3 | GO:0043233 | organelle lumen | 21/204 | 7.57 | 9.46e-14 | - | no |
| C | 3 | GO:0005622 | intracellular | 102/204 | 1.88 | 2.96e-13 | - | no |
| C | 3 | GO:0044424 | intracellular part | 99/204 | 1.90 | 3.84e-13 | - | no |
| C | 5 | GO:0031981 | nuclear lumen | 18/204 | 7.30 | 8.27e-12 | - | no |
| C | 3 | GO:0044446 | intracellular organelle part | 42/204 | 2.87 | 1.28e-10 | - | no |
| C | 3 | GO:0044422 | organelle part | 42/204 | 2.87 | 1.32e-10 | - | no |
| C | 4 | GO:0044428 | nuclear part | 19/204 | 5.60 | 2.68e-10 | - | no |
| C | 4 | GO:0005840 | ribosome | 16/204 | 6.12 | 1.43e-09 | - | no |
| C | 3 | GO:0043229 | intracellular organelle | 84/204 | 1.78 | 2.67e-09 | - | no |
| C | 4 | GO:0033279 | ribosomal subunit | 12/204 | 7.25 | 1.45e-08 | - | no |
| C | 5 | GO:0022626 | cytosolic ribosome | 11/204 | 5.86 | 4.81e-07 | - | no |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 72/204 | 1.61 | 4.39e-06 | - | no |
| C | 3 | GO:0043227 | membrane-bounded organelle | 72/204 | 1.61 | 4.41e-06 | - | no |
| C | 4 | GO:0005737 | cytoplasm | 62/204 | 1.62 | 1.92e-05 | - | no |
| C | 4 | GO:0044444 | cytoplasmic part | 58/204 | 1.64 | 2.99e-05 | - | no |
| C | 5 | GO:0005739 | mitochondrion | 18/204 | 2.76 | 3.38e-05 | - | no |
| C | 5 | GO:0005634 | nucleus | 32/204 | 2.01 | 5.31e-05 | - | no |
| C | 5 | GO:0005829 | cytosol | 11/204 | 2.61 | 1.19e-03 | - | no |
| C | 3 | GO:0044464 | cell part | 110/204 | 1.18 | 7.85e-03 | - | yes |
| M | 3 | GO:0003735 | structural constituent of ribosome | 16/204 | 7.25 | 1.10e-10 | - | no |
| M | 4 | GO:0003723 | RNA binding | 17/204 | 2.40 | 2.92e-04 | - | no |
| M | 3 | GO:0003676 | nucleic acid binding | 36/204 | 1.49 | 5.59e-03 | - | no |
| PS | 4 | PO:0000037 | shoot apex | 126/204 | 1.44 | 2.33e-08 | - | yes |
| PS | 5 | PO:0020038 | petiole | 114/204 | 1.47 | 8.13e-08 | - | yes |
| PS | 3 | PO:0009005 | root | 126/204 | 1.37 | 5.01e-07 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 116/204 | 1.40 | 1.04e-06 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 113/204 | 1.34 | 1.60e-05 | - | yes |
| PS | 4 | PO:0009025 | leaf | 122/204 | 1.30 | 2.67e-05 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 113/204 | 1.32 | 3.94e-05 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 105/204 | 1.33 | 7.20e-05 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 117/204 | 1.27 | 1.50e-04 | - | yes |
| PS | 4 | PO:0009047 | stem | 111/204 | 1.29 | 1.64e-04 | - | yes |
| PS | 3 | PO:0009032 | petal | 114/204 | 1.28 | 2.03e-04 | - | yes |
| PS | 4 | PO:0009009 | embryo | 123/204 | 1.25 | 2.22e-04 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 110/204 | 1.28 | 2.23e-04 | - | yes |
| PS | 3 | PO:0009010 | seed | 124/204 | 1.24 | 2.50e-04 | - | yes |
| PS | 5 | PO:0008037 | seedling | 114/204 | 1.27 | 2.86e-04 | - | yes |
| PS | 3 | PO:0009031 | sepal | 118/204 | 1.25 | 3.18e-04 | - | yes |
| PS | 4 | PO:0009001 | fruit | 124/204 | 1.24 | 3.27e-04 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 124/204 | 1.24 | 3.27e-04 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 118/204 | 1.23 | 8.51e-04 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 118/204 | 1.23 | 8.51e-04 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 126/204 | 1.20 | 9.96e-04 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 95/204 | 1.27 | 1.52e-03 | - | yes |
| PS | 3 | PO:0009013 | meristem | 102/204 | 1.24 | 1.77e-03 | - | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 99/204 | 1.25 | 1.93e-03 | - | yes |
| PS | 5 | PO:0009046 | flower | 126/204 | 1.19 | 1.99e-03 | - | yes |
| PS | 3 | PO:0009006 | shoot | 130/204 | 1.17 | 2.51e-03 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 126/204 | 1.18 | 2.63e-03 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 121/204 | 1.49 | 5.57e-09 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 122/204 | 1.44 | 4.58e-08 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 121/204 | 1.44 | 5.98e-08 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 123/204 | 1.34 | 4.17e-06 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 123/204 | 1.33 | 5.42e-06 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 117/204 | 1.35 | 5.79e-06 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 114/204 | 1.36 | 6.68e-06 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 115/204 | 1.34 | 1.39e-05 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 115/204 | 1.34 | 1.41e-05 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 105/204 | 1.34 | 5.87e-05 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 105/204 | 1.34 | 6.02e-05 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 125/204 | 1.24 | 2.36e-04 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 126/204 | 1.21 | 7.19e-04 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 119/204 | 1.20 | 1.89e-03 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 126/204 | 1.18 | 2.73e-03 | - | yes |
| KW | 0 | nucleolus | - | 18/204 | 12.98 | 2.64e-16 | - | no |
| KW | 0 | ribosomal | - | 24/204 | 7.79 | 1.03e-15 | - | no |
| KW | 0 | ribosome | - | 21/204 | 7.80 | 5.25e-14 | - | no |
| KW | 0 | translation | - | 23/204 | 4.55 | 3.28e-10 | - | no |
| KW | 0 | processing | - | 12/204 | 8.29 | 2.90e-09 | - | no |
| KW | 0 | constituent | - | 16/204 | 5.60 | 5.47e-09 | - | no |
| KW | 0 | eukaryotic | - | 12/204 | 5.98 | 1.36e-07 | - | no |
| KW | 0 | structural | - | 16/204 | 4.47 | 1.40e-07 | - | no |
| KW | 0 | biogenesis | - | 10/204 | 7.21 | 1.72e-07 | - | no |
| KW | 0 | cytosolic | - | 11/204 | 5.04 | 2.34e-06 | - | no |
| KW | 0 | mitochondrial | - | 11/204 | 4.78 | 3.98e-06 | - | no |
| KW | 0 | subunit | - | 21/204 | 2.81 | 6.68e-06 | - | no |
| KW | 0 | mitochondrion | - | 15/204 | 2.68 | 1.75e-04 | - | no |
| KW | 0 | motif | - | 13/204 | 2.62 | 5.04e-04 | - | no |
| KW | 0 | complex | - | 18/204 | 2.08 | 1.14e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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