ARTADE2 予測遺伝子モデル データベースTAIR_gene_model (on ARTADE2DB) (ver. TAIR9)Genes with tiling-array support (Annotated)

AT2G01900.1
http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u220190001000i

AT2G01900.1(↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot



Expression profile (Values are plotted in Log(2) values.)


Genes with related expresssion profiles.
Positively Correlated Genes
GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
AT4G29740.20.933158CKX4 (CYTOKININ OXIDASE 4)OMAT4P009770---
AT1G13300.10.91802myb family transcription factorOMAT1P004720---
AT1G30370.10.910787lipase class 3 family proteinOMAT1P109620---
AT4G37290.10.8969unknown proteinOMAT4P111230---
AT4G02850.10.891163phenazine biosynthesis PhzC/PhzF family proteinOMAT4P100990---
AT3G54260.10.888236unknown proteinOMAT3P113010---
AT2G46890.10.883425oxidoreductase, acting on the CH-CH group of donorsOMAT2P112140---
AT5G64120.10.883151peroxidase, putativeOMAT5P117460---
AT1G30750.10.881778unknown proteinOMAT1P109715---
AT4G12090.10.881548cornichon family protein----
Negatively Correlated Genes
GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
AT5G41830.1-0.768652F-box family protein-related----
AT3G33555.1-0.72515transposable element gene----
AT1G14590.1-0.694634FUNCTIONS IN: molecular_function unknown----
AT2G07744.1-0.686394transposable element gene----
AT1G20750.1-0.670164helicase-related----
AT3G13280.1-0.661635FUNCTIONS IN: molecular_function unknown----
AT5G34833.1-0.661361transposable element gene----
AT2G19360.1-0.658953unknown protein----
AT4G15860.1-0.657085transposable element gene----
AT3G07640.1-0.653664unknown proteinOMAT3P002720---

Get whole results


Over-Representation Analysis Result

p-value <= 1.00e-06:20 terms with high significance
1.00e-06 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1)Depth of the term in ontology treeID/TermDescriptionNumber of genesOver-Representative rate (*2)p-value (*3)PosMed p-value (*4)
(Link to PosMed)
Found on gene annotation
B3GO:0006810transport22/2002.152.57e-04-no
B3GO:0051234establishment of localization22/2002.142.68e-04-no
B4GO:0006629lipid metabolic process10/2002.304.58e-03-no
C3GO:0012505endomembrane system68/2002.801.61e-16-no
C3GO:0044464cell part127/2001.391.46e-07-no
M3GO:0016491oxidoreductase activity25/2002.963.71e-07-no
M5GO:0046872metal ion binding26/2001.924.99e-04-no
M4GO:0043169cation binding26/2001.811.17e-03-no
M3GO:0043167ion binding26/2001.811.17e-03-no
M3GO:0022857transmembrane transporter activity12/2002.144.49e-03-no
M4GO:0022891substrate-specific transmembrane transporter activity10/2002.275.06e-03-no
PS3PO:0009005root157/2001.745.81e-23-yes
PS5PO:0008037seedling107/2001.213.12e-03-yes
KW0hypocotyl-31/20013.287.76e-27-yes
KW0endomembrane-68/2002.883.86e-17-no
KW0system-68/2002.811.40e-16-no
KW0ipr004146-10/20012.505.62e-10-no
KW0ipr011424-10/20011.551.32e-09-no
KW0stage-43/2002.221.71e-07-no
KW0differentiation-36/2002.383.44e-07-no
KW0expansion-35/2002.385.00e-07-no
KW0petal-34/2002.331.19e-06-no
KW0transport-23/2002.364.43e-05-no
KW0lipid-12/2003.494.69e-05-no
KW0cotyledon-15/2002.858.67e-053.00E-70no
KW0visible-12/2003.241.00e-04-no
KW0anthesis-27/2002.051.27e-04-yes
KW0putative-40/2001.731.80e-04-no
KW0inhibitor-10/2003.352.30e-04-no
KW0related-45/2001.604.29e-041.00E-130yes
KW0leaves-13/2002.634.95e-04-no
KW0kinase-21/2001.999.37e-04-no
KW0response-31/2001.739.50e-04-no
KW0electron-10/2002.819.80e-04-no
KW0integral-10/2002.809.94e-04-no
KW0class-14/2002.341.08e-03-no
KW0bilateral-10/2002.741.20e-03-no
KW0carrier-10/2002.492.50e-03-no
KW0ipr008271-11/2002.253.92e-03-no
KW0intracellular-11/2002.136.01e-03-no
KW0transmembrane-14/2001.936.56e-03-no
KW0ipr017442-11/2002.097.04e-03-no
KW0process-31/2001.517.38e-03-no
KW0oxidoreductase-10/2002.157.56e-03-no
KW0stress-10/2002.137.91e-03-no
(*1)[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [KW]:words found in gene description.
(*2)([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3)P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4)PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.

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AT2G01900.1

TAIR_gene_model (on ARTADE2DB) (ver. TAIR9)

status_about_related_gene
  • with_OMAT_gene
Correlation_Score
  • 0.576136
description
  • AT2G01900.1(↑ Click "Links", if this line appears at the beginning.)

    Other supporting information

    Gene Model

    Correlation Plot



    Expression profile (Values are plotted in Log(2) values.)


    Genes with related expresssion profiles.
    Positively Correlated Genes
    GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
    AT4G29740.20.933158CKX4 (CYTOKININ OXIDASE 4)OMAT4P009770---
    AT1G13300.10.91802myb family transcription factorOMAT1P004720---
    AT1G30370.10.910787lipase class 3 family proteinOMAT1P109620---
    AT4G37290.10.8969unknown proteinOMAT4P111230---
    AT4G02850.10.891163phenazine biosynthesis PhzC/PhzF family proteinOMAT4P100990---
    AT3G54260.10.888236unknown proteinOMAT3P113010---
    AT2G46890.10.883425oxidoreductase, acting on the CH-CH group of donorsOMAT2P112140---
    AT5G64120.10.883151peroxidase, putativeOMAT5P117460---
    AT1G30750.10.881778unknown proteinOMAT1P109715---
    AT4G12090.10.881548cornichon family protein----
    Negatively Correlated Genes
    GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
    AT5G41830.1-0.768652F-box family protein-related----
    AT3G33555.1-0.72515transposable element gene----
    AT1G14590.1-0.694634FUNCTIONS IN: molecular_function unknown----
    AT2G07744.1-0.686394transposable element gene----
    AT1G20750.1-0.670164helicase-related----
    AT3G13280.1-0.661635FUNCTIONS IN: molecular_function unknown----
    AT5G34833.1-0.661361transposable element gene----
    AT2G19360.1-0.658953unknown protein----
    AT4G15860.1-0.657085transposable element gene----
    AT3G07640.1-0.653664unknown proteinOMAT3P002720---

    Get whole results


    Over-Representation Analysis Result

    p-value <= 1.00e-06:20 terms with high significance
    1.00e-06 < p-value <= 8.76e-06 :With considering multiple testing correction;
    p <= 1.00e-02 / 1142
    8.76e-06 < p-value <= 1.00e-02

    Type of term (*1)Depth of the term in ontology treeID/TermDescriptionNumber of genesOver-Representative rate (*2)p-value (*3)PosMed p-value (*4)
    (Link to PosMed)
    Found on gene annotation
    B3GO:0006810transport22/2002.152.57e-04-no
    B3GO:0051234establishment of localization22/2002.142.68e-04-no
    B4GO:0006629lipid metabolic process10/2002.304.58e-03-no
    C3GO:0012505endomembrane system68/2002.801.61e-16-no
    C3GO:0044464cell part127/2001.391.46e-07-no
    M3GO:0016491oxidoreductase activity25/2002.963.71e-07-no
    M5GO:0046872metal ion binding26/2001.924.99e-04-no
    M4GO:0043169cation binding26/2001.811.17e-03-no
    M3GO:0043167ion binding26/2001.811.17e-03-no
    M3GO:0022857transmembrane transporter activity12/2002.144.49e-03-no
    M4GO:0022891substrate-specific transmembrane transporter activity10/2002.275.06e-03-no
    PS3PO:0009005root157/2001.745.81e-23-yes
    PS5PO:0008037seedling107/2001.213.12e-03-yes
    KW0hypocotyl-31/20013.287.76e-27-yes
    KW0endomembrane-68/2002.883.86e-17-no
    KW0system-68/2002.811.40e-16-no
    KW0ipr004146-10/20012.505.62e-10-no
    KW0ipr011424-10/20011.551.32e-09-no
    KW0stage-43/2002.221.71e-07-no
    KW0differentiation-36/2002.383.44e-07-no
    KW0expansion-35/2002.385.00e-07-no
    KW0petal-34/2002.331.19e-06-no
    KW0transport-23/2002.364.43e-05-no
    KW0lipid-12/2003.494.69e-05-no
    KW0cotyledon-15/2002.858.67e-053.00E-70no
    KW0visible-12/2003.241.00e-04-no
    KW0anthesis-27/2002.051.27e-04-yes
    KW0putative-40/2001.731.80e-04-no
    KW0inhibitor-10/2003.352.30e-04-no
    KW0related-45/2001.604.29e-041.00E-130yes
    KW0leaves-13/2002.634.95e-04-no
    KW0kinase-21/2001.999.37e-04-no
    KW0response-31/2001.739.50e-04-no
    KW0electron-10/2002.819.80e-04-no
    KW0integral-10/2002.809.94e-04-no
    KW0class-14/2002.341.08e-03-no
    KW0bilateral-10/2002.741.20e-03-no
    KW0carrier-10/2002.492.50e-03-no
    KW0ipr008271-11/2002.253.92e-03-no
    KW0intracellular-11/2002.136.01e-03-no
    KW0transmembrane-14/2001.936.56e-03-no
    KW0ipr017442-11/2002.097.04e-03-no
    KW0process-31/2001.517.38e-03-no
    KW0oxidoreductase-10/2002.157.56e-03-no
    KW0stress-10/2002.137.91e-03-no
    (*1)[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [KW]:words found in gene description.
    (*2)([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
    (*3)P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
    (*4)PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.

    Top Page
label
  • AT2G01900.1
attributionURL
Target_TAIR_Locus
gene_region
seeAlso
hasFile
Relative_ontology_term
ARTADE2_Gene (Ver.20100511)
Tiling_Array_Analysis_Result

AT2G01900.1

Genes with tiling-array support (Annotated)

status_about_related_gene
  • with_OMAT_gene
Correlation_Score
  • 0.576136
label
  • AT2G01900.1
attributionURL
Target_TAIR_Locus
gene_region
seeAlso
Relative_ontology_term
ARTADE2_Gene (Ver.20100511)
Tiling_Array_Analysis_Result