AT2G34040.1http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u223404001000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT3G06610.1 | 0.958449 | DNA-binding enhancer protein-related | OMAT3P002330 | - | - | - |
| AT1G13410.1 | 0.950305 | FUNCTIONS IN: molecular_function unknown | OMAT1P004730 | - | - | - |
| AT1G24050.1 | 0.937912 | unknown protein | OMAT1P008840 | - | - | - |
| AT1G71260.1 | 0.931729 | ATWHY2 (A. THALIANA WHIRLY 2) | OMAT1P118090 | - | - | - |
| AT3G20430.1 | 0.930648 | unknown protein | OMAT3P007810 | - | - | - |
| AT5G09510.1 | 0.92676 | 40S ribosomal protein S15 (RPS15D) | OMAT5P102550 | - | - | - |
| AT3G62810.1 | 0.924133 | complex 1 family protein / LVR family protein | OMAT3P017930 | - | - | - |
| AT4G29830.1 | 0.923367 | VIP3 (vernalization independence 3) | OMAT4P009800 | - | - | - |
| AT4G37090.1 | 0.923079 | unknown protein | OMAT4P012810 | - | - | - |
| AT3G22630.1 | 0.919681 | PBD1 (20S PROTEASOME BETA SUBUNIT D1) | OMAT3P107520 | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT4G17170.1 | -0.819857 | RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) | OMAT4P104230 | - | - | - |
| AT3G56050.1 | -0.817382 | protein kinase family protein | OMAT3P113620 | - | - | - |
| AT2G40880.1 | -0.804774 | ATCYSA (CYSTATIN A) | OMAT2P010940 | - | OMAT2P110180 | - |
| AT5G02380.1 | -0.802046 | MT2B (METALLOTHIONEIN 2B) | OMAT5P100430 | - | - | - |
| AT2G13920.1 | -0.795599 | pseudogene, CHP-rich zinc finger protein, putative, contains weak PHD zinc finger motifscontains weak PHD zinc finger motifsDC1 domain, a divergent protein kinase C domain of unknown function. | - | - | - | - |
| AT4G14910.2 | -0.775975 | imidazoleglycerol-phosphate dehydratase, putative | - | - | - | - |
| AT4G20260.4 | -0.767626 | DREPP plasma membrane polypeptide family protein | OMAT4P006170 | - | - | - |
| AT5G45350.1 | -0.764676 | proline-rich family protein | OMAT5P111240 | - | - | - |
| AT1G79040.1 | -0.76185 | PSBR (photosystem II subunit R) | OMAT1P023540 | - | OMAT1P120810 | - |
| AT3G56240.1 | -0.75902 | CCH (COPPER CHAPERONE) | OMAT3P113750 | - | OMAT3P015670 | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 5.30e-17 | :20 terms with high significance | |
| 5.30e-17 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0042254 | ribosome biogenesis | 18/200 | 14.05 | 6.03e-17 | - | no |
| B | 3 | GO:0022613 | ribonucleoprotein complex biogenesis | 18/200 | 13.60 | 1.10e-16 | - | no |
| B | 5 | GO:0006396 | RNA processing | 19/200 | 8.58 | 1.20e-13 | - | no |
| B | 5 | GO:0006364 | rRNA processing | 11/200 | 17.59 | 1.71e-12 | - | no |
| B | 4 | GO:0010467 | gene expression | 51/200 | 2.51 | 1.50e-10 | - | no |
| B | 5 | GO:0006412 | translation | 23/200 | 3.17 | 3.11e-07 | - | no |
| B | 4 | GO:0044260 | cellular macromolecule metabolic process | 62/200 | 1.76 | 1.23e-06 | - | no |
| B | 5 | GO:0016070 | RNA metabolic process | 23/200 | 2.70 | 4.95e-06 | - | no |
| B | 3 | GO:0043170 | macromolecule metabolic process | 62/200 | 1.60 | 2.78e-05 | - | no |
| B | 5 | GO:0090304 | nucleic acid metabolic process | 31/200 | 2.06 | 4.00e-05 | - | no |
| B | 3 | GO:0044237 | cellular metabolic process | 71/200 | 1.50 | 5.31e-05 | - | no |
| B | 4 | GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 33/200 | 1.96 | 6.70e-05 | - | no |
| B | 3 | GO:0044238 | primary metabolic process | 72/200 | 1.45 | 1.45e-04 | - | no |
| B | 4 | GO:0034641 | cellular nitrogen compound metabolic process | 35/200 | 1.80 | 2.19e-04 | - | no |
| B | 3 | GO:0006807 | nitrogen compound metabolic process | 35/200 | 1.76 | 3.19e-04 | - | no |
| B | 5 | GO:0044267 | cellular protein metabolic process | 31/200 | 1.52 | 6.93e-03 | - | no |
| B | 5 | GO:0034645 | cellular macromolecule biosynthetic process | 32/200 | 1.48 | 8.82e-03 | - | no |
| B | 4 | GO:0009059 | macromolecule biosynthetic process | 32/200 | 1.48 | 9.22e-03 | - | no |
| C | 3 | GO:0030529 | ribonucleoprotein complex | 33/200 | 9.46 | 1.27e-23 | - | no |
| C | 3 | GO:0043228 | non-membrane-bounded organelle | 39/200 | 6.54 | 9.42e-22 | - | no |
| C | 4 | GO:0043232 | intracellular non-membrane-bounded organelle | 39/200 | 6.54 | 9.42e-22 | - | no |
| C | 4 | GO:0070013 | intracellular organelle lumen | 27/200 | 9.95 | 3.14e-20 | - | no |
| C | 3 | GO:0043233 | organelle lumen | 27/200 | 9.93 | 3.33e-20 | - | no |
| C | 5 | GO:0031981 | nuclear lumen | 23/200 | 9.51 | 4.41e-17 | - | no |
| C | 4 | GO:0044428 | nuclear part | 25/200 | 7.52 | 6.42e-16 | - | no |
| C | 5 | GO:0005730 | nucleolus | 19/200 | 11.08 | 9.49e-16 | - | no |
| C | 3 | GO:0005622 | intracellular | 105/200 | 1.97 | 2.00e-15 | - | no |
| C | 3 | GO:0044424 | intracellular part | 101/200 | 1.98 | 8.63e-15 | - | no |
| C | 4 | GO:0005840 | ribosome | 21/200 | 8.20 | 1.89e-14 | - | no |
| C | 3 | GO:0044446 | intracellular organelle part | 45/200 | 3.14 | 1.17e-12 | - | no |
| C | 3 | GO:0044422 | organelle part | 45/200 | 3.14 | 1.21e-12 | - | no |
| C | 3 | GO:0043229 | intracellular organelle | 90/200 | 1.95 | 2.32e-12 | - | no |
| C | 4 | GO:0033279 | ribosomal subunit | 14/200 | 8.62 | 1.14e-10 | - | no |
| C | 5 | GO:0005634 | nucleus | 41/200 | 2.62 | 3.19e-09 | - | no |
| C | 5 | GO:0022626 | cytosolic ribosome | 13/200 | 7.06 | 5.91e-09 | - | no |
| C | 5 | GO:0005739 | mitochondrion | 24/200 | 3.75 | 7.04e-09 | - | no |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 78/200 | 1.78 | 1.55e-08 | - | no |
| C | 3 | GO:0043227 | membrane-bounded organelle | 78/200 | 1.78 | 1.56e-08 | - | no |
| C | 4 | GO:0005737 | cytoplasm | 67/200 | 1.79 | 1.98e-07 | - | no |
| C | 5 | GO:0044445 | cytosolic part | 10/200 | 6.68 | 3.72e-07 | - | no |
| C | 4 | GO:0044444 | cytoplasmic part | 59/200 | 1.70 | 7.55e-06 | - | no |
| C | 3 | GO:0044464 | cell part | 119/200 | 1.30 | 3.43e-05 | - | no |
| C | 3 | GO:0043234 | protein complex | 18/200 | 2.75 | 3.47e-05 | - | no |
| C | 5 | GO:0005829 | cytosol | 12/200 | 2.90 | 2.94e-04 | - | no |
| M | 3 | GO:0003735 | structural constituent of ribosome | 18/200 | 8.31 | 8.47e-13 | - | no |
| M | 4 | GO:0003723 | RNA binding | 19/200 | 2.74 | 2.39e-05 | - | no |
| M | 3 | GO:0003676 | nucleic acid binding | 39/200 | 1.64 | 6.25e-04 | - | no |
| M | 3 | GO:0000166 | nucleotide binding | 22/200 | 1.67 | 6.83e-03 | - | no |
| PS | 4 | PO:0000037 | shoot apex | 155/200 | 1.80 | 4.80e-24 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 145/200 | 1.78 | 1.47e-20 | - | yes |
| PS | 5 | PO:0020038 | petiole | 139/200 | 1.83 | 4.46e-20 | - | yes |
| PS | 3 | PO:0009005 | root | 150/200 | 1.67 | 1.32e-18 | - | yes |
| PS | 5 | PO:0008037 | seedling | 146/200 | 1.65 | 2.91e-17 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 140/200 | 1.70 | 4.38e-17 | - | yes |
| PS | 3 | PO:0009032 | petal | 145/200 | 1.65 | 4.84e-17 | - | yes |
| PS | 4 | PO:0009025 | leaf | 149/200 | 1.62 | 5.30e-17 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 134/200 | 1.73 | 1.14e-16 | - | yes |
| PS | 4 | PO:0009047 | stem | 141/200 | 1.67 | 1.33e-16 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 140/200 | 1.67 | 2.46e-16 | - | yes |
| PS | 4 | PO:0009009 | embryo | 152/200 | 1.57 | 2.72e-16 | - | yes |
| PS | 3 | PO:0009010 | seed | 153/200 | 1.56 | 3.07e-16 | - | yes |
| PS | 4 | PO:0009001 | fruit | 153/200 | 1.56 | 5.47e-16 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 153/200 | 1.56 | 5.47e-16 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 145/200 | 1.61 | 7.75e-16 | - | yes |
| PS | 3 | PO:0009031 | sepal | 147/200 | 1.59 | 1.02e-15 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 148/200 | 1.57 | 2.69e-15 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 148/200 | 1.57 | 2.69e-15 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 137/200 | 1.63 | 9.35e-15 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 153/200 | 1.49 | 5.29e-14 | - | yes |
| PS | 3 | PO:0009006 | shoot | 158/200 | 1.46 | 7.44e-14 | - | yes |
| PS | 5 | PO:0009046 | flower | 153/200 | 1.47 | 2.44e-13 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 153/200 | 1.46 | 4.59e-13 | - | yes |
| PS | 3 | PO:0009013 | meristem | 129/200 | 1.61 | 1.06e-12 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 121/200 | 1.65 | 2.43e-12 | - | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 124/200 | 1.60 | 1.04e-11 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 118/200 | 1.42 | 1.97e-07 | - | yes |
| PS | 3 | PO:0000084 | sperm cell | 59/200 | 1.82 | 8.10e-07 | - | no |
| PS | 3 | PO:0020097 | generative cell | 59/200 | 1.82 | 8.10e-07 | - | no |
| PS | 4 | PO:0000351 | guard mother cell | 24/200 | 2.22 | 8.51e-05 | - | no |
| PS | 3 | PO:0000070 | meristemoid | 24/200 | 2.22 | 8.73e-05 | - | no |
| PS | 5 | PO:0006016 | leaf epidermis | 24/200 | 2.16 | 1.33e-04 | - | no |
| PS | 5 | PO:0006035 | shoot epidermis | 24/200 | 2.14 | 1.48e-04 | - | no |
| PS | 5 | PO:0000349 | epidermal initial | 24/200 | 2.13 | 1.65e-04 | - | no |
| PS | 4 | PO:0004011 | initial cell | 24/200 | 2.11 | 1.82e-04 | - | no |
| PS | 3 | PO:0004010 | meristematic cell | 24/200 | 2.11 | 1.86e-04 | - | no |
| PS | 3 | PO:0004013 | epidermal cell | 24/200 | 2.01 | 3.82e-04 | - | no |
| PS | 4 | PO:0005679 | epidermis | 24/200 | 1.94 | 6.61e-04 | - | no |
| PS | 3 | PO:0009014 | dermal tissue | 24/200 | 1.94 | 6.65e-04 | - | no |
| PS | 4 | PO:0000293 | guard cell | 20/200 | 1.86 | 2.70e-03 | - | no |
| PG | 5 | PO:0001081 | F mature embryo stage | 149/200 | 1.87 | 3.61e-24 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 151/200 | 1.82 | 2.73e-23 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 148/200 | 1.80 | 9.24e-22 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 152/200 | 1.69 | 9.40e-20 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 152/200 | 1.68 | 1.55e-19 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 143/200 | 1.74 | 5.91e-19 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 132/200 | 1.72 | 8.13e-16 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 132/200 | 1.72 | 8.55e-16 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 139/200 | 1.65 | 1.11e-15 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 139/200 | 1.65 | 1.13e-15 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 139/200 | 1.64 | 2.21e-15 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 152/200 | 1.54 | 2.87e-15 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 154/200 | 1.51 | 7.93e-15 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 147/200 | 1.52 | 1.51e-13 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 154/200 | 1.47 | 1.59e-13 | - | yes |
| KW | 0 | ribosomal | - | 24/200 | 7.95 | 6.45e-16 | - | no |
| KW | 0 | ribosome | - | 22/200 | 8.33 | 3.42e-15 | - | no |
| KW | 0 | nucleolus | - | 16/200 | 11.77 | 4.69e-14 | - | no |
| KW | 0 | translation | - | 25/200 | 5.04 | 6.21e-12 | - | no |
| KW | 0 | constituent | - | 18/200 | 6.42 | 7.34e-11 | - | no |
| KW | 0 | complex | - | 31/200 | 3.66 | 9.90e-11 | - | no |
| KW | 0 | subunit | - | 27/200 | 3.68 | 1.33e-09 | - | no |
| KW | 0 | structural | - | 18/200 | 5.13 | 3.03e-09 | - | no |
| KW | 0 | processing | - | 11/200 | 7.75 | 2.33e-08 | - | no |
| KW | 0 | biogenesis | - | 10/200 | 7.36 | 1.41e-07 | - | no |
| KW | 0 | mitochondrion | - | 20/200 | 3.65 | 1.72e-07 | - | no |
| KW | 0 | cytosolic | - | 12/200 | 5.60 | 2.85e-07 | - | no |
| KW | 0 | intracellular | - | 17/200 | 3.29 | 4.97e-06 | - | no |
| KW | 0 | eukaryotic | - | 10/200 | 5.08 | 5.24e-06 | - | no |
| KW | 0 | nuclear | - | 12/200 | 3.90 | 1.49e-05 | - | no |
| KW | 0 | mitochondrial | - | 10/200 | 4.43 | 1.88e-05 | - | no |
| KW | 0 | nucleotide | - | 16/200 | 2.51 | 2.43e-04 | - | no |
| KW | 0 | motif | - | 13/200 | 2.68 | 4.13e-04 | - | no |
| KW | 0 | ubiquitin | - | 11/200 | 2.45 | 2.00e-03 | - | no |
| KW | 0 | nucleus | - | 22/200 | 1.71 | 5.19e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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