ARTADE2 予測遺伝子モデル データベースTAIR_gene_model (on ARTADE2DB) (ver. TAIR9)Genes with tiling-array support (Annotated)
AT2G41430.3http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u224143003000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT3G50950.2 | 0.899265 | disease resistance protein (CC-NBS-LRR class), putative | OMAT3P013540 | - | - | - |
| AT3G11820.1 | 0.874485 | SYP121 (SYNTAXIN OF PLANTS 121) | OMAT3P103910 | - | - | - |
| AT3G57062.1 | 0.864159 | unknown protein | OMAT3P015930 | - | - | - |
| AT4G01090.1 | 0.863971 | extra-large G-protein-related | OMAT4P100480 | - | - | - |
| AT1G76180.1 | 0.860575 | ERD14 (EARLY RESPONSE TO DEHYDRATION 14) | OMAT1P119740 | - | OMAT1P022380 | - |
| AT2G13790.1 | 0.860246 | SERK4 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 4) | OMAT2P001690 | - | - | - |
| AT5G52750.1 | 0.853272 | heavy-metal-associated domain-containing protein | OMAT5P015300 | - | - | - |
| AT1G53210.1 | 0.85288 | sodium/calcium exchanger family protein / calcium-binding EF hand family protein | OMAT1P014680 | - | - | - |
| AT3G61210.1 | 0.849936 | embryo-abundant protein-related | OMAT3P115160 | - | - | - |
| AT5G54110.1 | 0.847774 | ATMAMI (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED MANNITOL-INDUCED) | - | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT5G20790.1 | -0.869447 | unknown protein | OMAT5P106190 | - | OMAT5P007210 | - |
| AT3G44264.1 | -0.869015 | transposable element gene | - | - | - | - |
| AT3G28153.1 | -0.867281 | transposable element gene | OMAT3P109230 | - | - | - |
| AT4G10750.1 | -0.864801 | HpcH/HpaI aldolase family protein | OMAT4P002630 | - | - | - |
| AT4G09565.1 | -0.856854 | transposable element gene | - | - | - | - |
| AT4G03873.1 | -0.854848 | transposable element gene | - | - | - | - |
| AT1G44045.1 | -0.841921 | transposable element gene | - | - | - | - |
| AT5G05810.1 | -0.841435 | ATL43 | - | - | - | - |
| AT3G08640.1 | -0.840994 | alphavirus core protein family | OMAT3P002970 | - | - | - |
| AT5G64400.2 | -0.837649 | unknown protein | OMAT5P019825 | - | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 5.84e-32 | :20 terms with high significance | |
| 5.84e-32 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0006950 | response to stress | 43/200 | 3.47 | 1.35e-13 | 2.13E-16 | yes |
| B | 4 | GO:0006952 | defense response | 25/200 | 5.49 | 9.33e-13 | - | no |
| B | 3 | GO:0008219 | cell death | 15/200 | 10.35 | 1.82e-12 | 9.20E-10 | no |
| B | 4 | GO:0012501 | programmed cell death | 13/200 | 10.39 | 3.84e-11 | - | no |
| B | 3 | GO:0006955 | immune response | 15/200 | 7.92 | 1.01e-10 | - | no |
| B | 4 | GO:0045087 | innate immune response | 14/200 | 7.89 | 3.91e-10 | - | no |
| B | 5 | GO:0006915 | apoptosis | 10/200 | 11.71 | 1.13e-09 | 9.20E-10 | no |
| B | 4 | GO:0010033 | response to organic substance | 25/200 | 3.74 | 3.79e-09 | - | no |
| B | 4 | GO:0009620 | response to fungus | 10/200 | 10.08 | 5.55e-09 | - | no |
| B | 3 | GO:0051707 | response to other organism | 17/200 | 5.07 | 9.15e-09 | - | yes |
| B | 3 | GO:0042221 | response to chemical stimulus | 33/200 | 2.89 | 1.06e-08 | 1.17E-09 | yes |
| B | 3 | GO:0009607 | response to biotic stimulus | 17/200 | 4.70 | 2.92e-08 | - | yes |
| B | 5 | GO:0006796 | phosphate metabolic process | 21/200 | 3.16 | 9.80e-07 | - | no |
| B | 4 | GO:0006793 | phosphorus metabolic process | 21/200 | 3.16 | 9.94e-07 | - | no |
| B | 4 | GO:0007165 | signal transduction | 13/200 | 4.52 | 1.38e-06 | 6.36E-16 | no |
| B | 3 | GO:0023046 | signaling process | 13/200 | 4.01 | 5.51e-06 | 1.17E-09 | no |
| B | 3 | GO:0023060 | signal transmission | 13/200 | 4.01 | 5.51e-06 | - | no |
| B | 3 | GO:0009719 | response to endogenous stimulus | 16/200 | 3.10 | 1.88e-05 | 1.17E-09 | no |
| B | 4 | GO:0009725 | response to hormone stimulus | 15/200 | 3.17 | 2.45e-05 | - | no |
| B | 3 | GO:0051641 | cellular localization | 11/200 | 3.74 | 4.52e-05 | - | no |
| B | 5 | GO:0006464 | protein modification process | 24/200 | 2.31 | 4.68e-05 | - | no |
| B | 3 | GO:0050789 | regulation of biological process | 34/200 | 1.97 | 4.74e-05 | - | no |
| B | 3 | GO:0050794 | regulation of cellular process | 31/200 | 2.03 | 5.34e-05 | - | no |
| B | 3 | GO:0023033 | signaling pathway | 11/200 | 3.25 | 1.67e-04 | 2.02E-16 | no |
| B | 4 | GO:0043412 | macromolecule modification | 24/200 | 2.12 | 1.80e-04 | - | no |
| B | 3 | GO:0009628 | response to abiotic stimulus | 16/200 | 2.16 | 1.32e-03 | - | yes |
| B | 3 | GO:0006810 | transport | 20/200 | 1.95 | 1.51e-03 | 9.20E-10 | no |
| B | 3 | GO:0051234 | establishment of localization | 20/200 | 1.95 | 1.56e-03 | - | no |
| B | 3 | GO:0051716 | cellular response to stimulus | 10/200 | 2.26 | 5.16e-03 | - | no |
| B | 5 | GO:0044267 | cellular protein metabolic process | 31/200 | 1.52 | 6.93e-03 | - | no |
| B | 3 | GO:0009056 | catabolic process | 10/200 | 2.10 | 8.89e-03 | - | no |
| C | 3 | GO:0016020 | membrane | 65/200 | 2.37 | 2.42e-12 | 1.96E-15 | no |
| C | 4 | GO:0005886 | plasma membrane | 37/200 | 2.99 | 5.63e-10 | 9.20E-10 | no |
| C | 3 | GO:0044464 | cell part | 122/200 | 1.33 | 5.16e-06 | 2.86E-16 | yes |
| C | 4 | GO:0044444 | cytoplasmic part | 56/200 | 1.61 | 6.33e-05 | 1.17E-09 | no |
| C | 3 | GO:0044424 | intracellular part | 74/200 | 1.45 | 1.13e-04 | - | yes |
| C | 4 | GO:0005737 | cytoplasm | 58/200 | 1.55 | 1.44e-04 | 9.20E-10 | yes |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 65/200 | 1.48 | 2.04e-04 | - | no |
| C | 3 | GO:0043227 | membrane-bounded organelle | 65/200 | 1.48 | 2.05e-04 | - | no |
| C | 4 | GO:0031224 | intrinsic to membrane | 14/200 | 2.61 | 3.53e-04 | - | no |
| C | 3 | GO:0044425 | membrane part | 18/200 | 2.28 | 3.97e-04 | 9.16E-17 | no |
| C | 3 | GO:0005622 | intracellular | 74/200 | 1.39 | 4.71e-04 | 9.20E-10 | yes |
| C | 3 | GO:0043229 | intracellular organelle | 65/200 | 1.41 | 8.62e-04 | - | no |
| C | 5 | GO:0009536 | plastid | 31/200 | 1.68 | 1.54e-03 | 1.17E-09 | no |
| M | 5 | GO:0032555 | purine ribonucleotide binding | 32/200 | 3.26 | 9.58e-10 | - | no |
| M | 4 | GO:0032553 | ribonucleotide binding | 32/200 | 3.26 | 9.58e-10 | - | no |
| M | 5 | GO:0030554 | adenyl nucleotide binding | 30/200 | 3.32 | 2.11e-09 | - | no |
| M | 4 | GO:0001883 | purine nucleoside binding | 30/200 | 3.32 | 2.11e-09 | - | no |
| M | 3 | GO:0001882 | nucleoside binding | 30/200 | 3.31 | 2.24e-09 | - | no |
| M | 4 | GO:0017076 | purine nucleotide binding | 32/200 | 3.08 | 3.84e-09 | - | no |
| M | 3 | GO:0004871 | signal transducer activity | 14/200 | 6.22 | 9.81e-09 | - | no |
| M | 5 | GO:0016301 | kinase activity | 27/200 | 3.36 | 1.00e-08 | 9.20E-10 | no |
| M | 4 | GO:0016772 | transferase activity, transferring phosphorus-containing groups | 29/200 | 3.16 | 1.14e-08 | - | no |
| M | 4 | GO:0004872 | receptor activity | 10/200 | 8.53 | 3.14e-08 | - | no |
| M | 5 | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | 22/200 | 3.54 | 7.66e-08 | - | no |
| M | 3 | GO:0000166 | nucleotide binding | 34/200 | 2.57 | 1.15e-07 | - | no |
| M | 3 | GO:0005515 | protein binding | 36/200 | 2.30 | 7.90e-07 | 2.00E-20 | yes |
| M | 3 | GO:0016740 | transferase activity | 37/200 | 2.26 | 8.32e-07 | - | no |
| M | 5 | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 11/200 | 2.47 | 1.85e-03 | - | no |
| M | 4 | GO:0016817 | hydrolase activity, acting on acid anhydrides | 11/200 | 2.45 | 2.00e-03 | - | no |
| M | 5 | GO:0046872 | metal ion binding | 22/200 | 1.62 | 9.34e-03 | - | no |
| PS | 4 | PO:0020030 | cotyledon | 169/200 | 2.30 | 2.82e-45 | 1.17E-09 | yes |
| PS | 5 | PO:0020038 | petiole | 170/200 | 2.23 | 7.62e-44 | - | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 171/200 | 2.20 | 1.87e-43 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 174/200 | 2.11 | 2.16e-42 | - | yes |
| PS | 3 | PO:0009013 | meristem | 172/200 | 2.14 | 3.68e-42 | 9.20E-10 | yes |
| PS | 5 | PO:0009028 | microsporophyll | 173/200 | 2.06 | 3.14e-40 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 167/200 | 2.16 | 5.10e-40 | - | yes |
| PS | 4 | PO:0009047 | stem | 173/200 | 2.05 | 8.04e-40 | 4.71E-16 | yes |
| PS | 4 | PO:0009025 | leaf | 177/200 | 1.92 | 9.10e-38 | 4.19E-17 | yes |
| PS | 5 | PO:0008037 | seedling | 173/200 | 1.96 | 9.21e-37 | 1.17E-09 | yes |
| PS | 4 | PO:0009026 | sporophyll | 174/200 | 1.93 | 2.23e-36 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 170/200 | 1.98 | 1.01e-35 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 174/200 | 1.85 | 3.05e-33 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 174/200 | 1.85 | 3.05e-33 | - | yes |
| PS | 3 | PO:0009032 | petal | 167/200 | 1.91 | 5.84e-32 | - | yes |
| PS | 4 | PO:0009009 | embryo | 174/200 | 1.80 | 1.27e-31 | 9.20E-10 | yes |
| PS | 4 | PO:0009001 | fruit | 175/200 | 1.78 | 2.53e-31 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 175/200 | 1.78 | 2.53e-31 | - | yes |
| PS | 3 | PO:0009010 | seed | 174/200 | 1.78 | 8.46e-31 | 3.72E-17 | yes |
| PS | 3 | PO:0006001 | phyllome | 177/200 | 1.73 | 2.90e-30 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 161/200 | 1.92 | 9.03e-30 | - | yes |
| PS | 3 | PO:0009031 | sepal | 168/200 | 1.82 | 1.71e-29 | - | yes |
| PS | 5 | PO:0009046 | flower | 175/200 | 1.68 | 1.36e-27 | 9.20E-10 | yes |
| PS | 3 | PO:0020091 | male gametophyte | 157/200 | 1.89 | 1.77e-27 | - | yes |
| PS | 3 | PO:0009005 | root | 163/200 | 1.81 | 3.36e-27 | 1.43E-16 | yes |
| PS | 4 | PO:0009049 | inflorescence | 175/200 | 1.67 | 3.37e-27 | - | yes |
| PS | 3 | PO:0009006 | shoot | 177/200 | 1.63 | 1.96e-26 | 9.20E-10 | yes |
| PS | 5 | PO:0009052 | pedicel | 152/200 | 1.87 | 4.87e-25 | - | yes |
| PS | 4 | PO:0006345 | pollen tube | 50/200 | 1.72 | 3.36e-05 | - | no |
| PS | 3 | PO:0000084 | sperm cell | 49/200 | 1.51 | 9.30e-04 | - | no |
| PS | 3 | PO:0020097 | generative cell | 49/200 | 1.51 | 9.30e-04 | - | no |
| PS | 3 | PO:0004013 | epidermal cell | 21/200 | 1.76 | 4.21e-03 | 9.20E-10 | no |
| PS | 4 | PO:0005679 | epidermis | 21/200 | 1.70 | 6.49e-03 | 9.20E-10 | no |
| PS | 3 | PO:0009014 | dermal tissue | 21/200 | 1.70 | 6.53e-03 | - | no |
| PS | 5 | PO:0006016 | leaf epidermis | 19/200 | 1.71 | 8.22e-03 | 9.20E-10 | no |
| PS | 5 | PO:0006035 | shoot epidermis | 19/200 | 1.70 | 8.84e-03 | - | no |
| PG | 5 | PO:0007133 | leaf production | 173/200 | 2.06 | 5.14e-40 | 9.20E-10 | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 173/200 | 2.06 | 5.32e-40 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 173/200 | 2.04 | 1.55e-39 | 9.20E-10 | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 166/200 | 2.16 | 2.20e-39 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 166/200 | 2.16 | 2.39e-39 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 173/200 | 1.78 | 1.60e-30 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 159/200 | 1.93 | 2.36e-29 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 165/200 | 1.82 | 2.03e-28 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 174/200 | 1.71 | 3.94e-28 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 157/200 | 1.91 | 4.44e-28 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 176/200 | 1.68 | 5.53e-28 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 164/200 | 1.82 | 6.53e-28 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 171/200 | 1.73 | 1.02e-27 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 155/200 | 1.87 | 5.32e-26 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 150/200 | 1.89 | 7.77e-25 | - | yes |
| PG | 5 | PO:0007605 | androecium developmental stages | 46/200 | 1.57 | 5.72e-04 | - | no |
| KW | 0 | ipr002182 | - | 14/200 | 14.73 | 4.96e-14 | - | no |
| KW | 0 | response | - | 52/200 | 2.90 | 3.61e-13 | 3.49E-15 | yes |
| KW | 0 | membrane | - | 65/200 | 2.44 | 6.52e-13 | 1.96E-15 | no |
| KW | 0 | disease | - | 16/200 | 9.14 | 2.82e-12 | 5.48E-15 | no |
| KW | 0 | plasma | - | 37/200 | 3.23 | 6.18e-11 | 9.20E-10 | no |
| KW | 0 | resistance | - | 18/200 | 6.33 | 9.45e-11 | 1.11E-15 | no |
| KW | 0 | defense | - | 19/200 | 5.45 | 4.31e-10 | 1.26E-16 | no |
| KW | 0 | transmembrane | - | 27/200 | 3.72 | 1.07e-09 | - | no |
| KW | 0 | apoptosis | - | 10/200 | 11.16 | 1.89e-09 | 9.20E-10 | no |
| KW | 0 | phosphorylation | - | 22/200 | 3.58 | 6.44e-08 | 9.20E-10 | no |
| KW | 0 | ipr000719 | - | 22/200 | 3.53 | 8.21e-08 | - | no |
| KW | 0 | leucine | - | 20/200 | 3.81 | 8.32e-08 | 1.17E-09 | no |
| KW | 0 | ipr008271 | - | 19/200 | 3.89 | 1.18e-07 | - | no |
| KW | 0 | ipr011009 | - | 22/200 | 3.40 | 1.58e-07 | - | no |
| KW | 0 | ipr001611 | - | 14/200 | 4.95 | 1.94e-07 | - | no |
| KW | 0 | threonine | - | 23/200 | 3.07 | 5.64e-07 | - | no |
| KW | 0 | kinase | - | 28/200 | 2.65 | 7.93e-07 | 9.20E-10 | no |
| KW | 0 | serine | - | 25/200 | 2.80 | 1.05e-06 | 1.17E-09 | no |
| KW | 0 | ipr001245 | - | 12/200 | 4.71 | 2.01e-06 | - | no |
| KW | 0 | atpase | - | 14/200 | 3.97 | 3.02e-06 | 9.20E-10 | no |
| KW | 0 | tyrosine | - | 14/200 | 3.95 | 3.28e-06 | 1.17E-09 | no |
| KW | 0 | stress | - | 16/200 | 3.41 | 5.60e-06 | 0 | yes |
| KW | 0 | amino | - | 23/200 | 2.67 | 6.12e-06 | 1.80E-15 | no |
| KW | 0 | ipr003593 | - | 10/200 | 4.99 | 6.22e-06 | - | no |
| KW | 0 | receptor | - | 16/200 | 3.36 | 6.73e-06 | 9.20E-10 | no |
| KW | 0 | transduction | - | 13/200 | 3.93 | 6.92e-06 | 6.98E-16 | no |
| KW | 0 | ipr017441 | - | 15/200 | 3.49 | 7.56e-06 | - | no |
| KW | 0 | ipr017442 | - | 16/200 | 3.04 | 2.48e-05 | - | no |
| KW | 0 | stimulus | - | 14/200 | 3.25 | 3.19e-05 | 1.17E-09 | no |
| KW | 0 | class | - | 17/200 | 2.84 | 3.62e-05 | 5.06E-16 | no |
| KW | 0 | signal | - | 14/200 | 3.19 | 3.97e-05 | 1.02E-15 | no |
| KW | 0 | ipr002290 | - | 11/200 | 3.73 | 4.61e-05 | - | no |
| KW | 0 | active | - | 20/200 | 2.44 | 7.90e-05 | 9.20E-10 | no |
| KW | 0 | calcium | - | 10/200 | 3.75 | 8.46e-05 | 1.17E-09 | no |
| KW | 0 | induced | - | 10/200 | 3.65 | 1.07e-04 | 0 | no |
| KW | 0 | putative | - | 40/200 | 1.73 | 1.80e-04 | 9.20E-10 | no |
| KW | 0 | nucleotide | - | 16/200 | 2.51 | 2.43e-04 | 9.20E-10 | no |
| KW | 0 | signaling | - | 11/200 | 2.95 | 4.00e-04 | 7.06E-16 | no |
| KW | 0 | repeat | - | 25/200 | 1.93 | 5.79e-04 | 1.17E-09 | no |
| KW | 0 | chloroplast | - | 31/200 | 1.76 | 7.37e-04 | - | no |
| KW | 0 | subunit | - | 15/200 | 2.05 | 3.00e-03 | 1.17E-09 | no |
| KW | 0 | transporter | - | 14/200 | 2.01 | 4.46e-03 | - | no |
| KW | 0 | conserved | - | 23/200 | 1.70 | 4.63e-03 | 3.05E-16 | no |
| KW | 0 | dependent | - | 22/200 | 1.64 | 8.03e-03 | 2.39E-15 | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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