AT4G01060.2http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u420106002000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT1G09470.1 | 0.898008 | unknown protein | OMAT1P102920 | - | - | - |
| AT3G54820.1 | 0.892379 | PIP2 | OMAT3P015050 | - | - | - |
| AT4G20320.1 | 0.891941 | CTP synthase/ catalytic | OMAT4P006210 | - | - | - |
| AT5G18550.1 | 0.887769 | nucleic acid binding / zinc ion binding | OMAT5P006420 | - | - | - |
| AT1G65150.1 | 0.886176 | meprin and TRAF homology domain-containing protein / MATH domain-containing protein | OMAT1P116070 | - | - | - |
| AT3G48460.1 | 0.885899 | GDSL-motif lipase/hydrolase family protein | OMAT3P012690 | - | - | - |
| AT1G02205.2 | 0.884067 | CER1 (ECERIFERUM 1) | OMAT1P000530 | - | - | - |
| AT5G48480.1 | 0.877495 | unknown protein | OMAT5P013810 | - | - | - |
| AT3G05600.1 | 0.877062 | epoxide hydrolase, putative | OMAT3P101810 | - | - | - |
| AT5G14610.1 | 0.873672 | ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / protein binding | OMAT5P004990 | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT3G53910.1 | -0.750147 | malate dehydrogenase-related | - | - | - | - |
| AT4G28860.1 | -0.732525 | ckl4 (Casein Kinase I-like 4) | OMAT4P009430 | - | - | - |
| AT5G16220.1 | -0.721672 | octicosapeptide/Phox/Bem1p (PB1) domain-containing protein | - | - | - | - |
| AT3G30821.1 | -0.720037 | transposable element gene | - | - | - | - |
| AT3G15060.1 | -0.717977 | AtRABA1g (Arabidopsis Rab GTPase homolog A1g) | OMAT3P005440 | - | - | - |
| AT3G55560.1 | -0.715665 | AGF2 (AT-hook protein of GA feedback 2) | OMAT3P113500 | - | - | - |
| AT3G13270.1 | -0.706128 | transposable element gene | - | - | - | - |
| AT2G42280.1 | -0.70592 | basic helix-loop-helix (bHLH) family protein | OMAT2P110740 | - | - | - |
| AT5G36226.1 | -0.704794 | transposable element gene | - | - | - | - |
| AT5G31511.1 | -0.679327 | transposable element gene | - | - | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.85e-16 | :20 terms with high significance | |
| 1.85e-16 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 5 | GO:0006631 | fatty acid metabolic process | 12/200 | 10.50 | 1.59e-10 | - | no |
| B | 5 | GO:0006633 | fatty acid biosynthetic process | 10/200 | 13.74 | 2.03e-10 | - | no |
| B | 4 | GO:0008610 | lipid biosynthetic process | 11/200 | 5.01 | 2.46e-06 | - | no |
| B | 4 | GO:0044255 | cellular lipid metabolic process | 12/200 | 4.46 | 3.58e-06 | - | no |
| B | 4 | GO:0006629 | lipid metabolic process | 15/200 | 3.45 | 8.83e-06 | - | no |
| B | 5 | GO:0016053 | organic acid biosynthetic process | 10/200 | 4.62 | 1.29e-05 | - | no |
| B | 4 | GO:0044283 | small molecule biosynthetic process | 15/200 | 3.30 | 1.50e-05 | - | no |
| B | 3 | GO:0048869 | cellular developmental process | 11/200 | 3.96 | 2.61e-05 | - | yes |
| B | 3 | GO:0009653 | anatomical structure morphogenesis | 12/200 | 3.57 | 3.78e-05 | - | yes |
| B | 5 | GO:0043436 | oxoacid metabolic process | 14/200 | 3.18 | 4.10e-05 | - | no |
| B | 4 | GO:0006082 | organic acid metabolic process | 14/200 | 3.17 | 4.22e-05 | - | no |
| B | 4 | GO:0048513 | organ development | 14/200 | 3.16 | 4.36e-05 | - | yes |
| B | 4 | GO:0048731 | system development | 14/200 | 3.16 | 4.42e-05 | - | yes |
| B | 4 | GO:0042180 | cellular ketone metabolic process | 14/200 | 3.12 | 5.07e-05 | - | no |
| B | 4 | GO:0005975 | carbohydrate metabolic process | 15/200 | 2.88 | 7.70e-05 | - | no |
| B | 3 | GO:0048856 | anatomical structure development | 21/200 | 2.35 | 9.85e-05 | - | yes |
| B | 3 | GO:0022414 | reproductive process | 16/200 | 2.66 | 1.28e-04 | - | yes |
| B | 3 | GO:0044281 | small molecule metabolic process | 20/200 | 2.23 | 2.82e-04 | - | no |
| B | 4 | GO:0044262 | cellular carbohydrate metabolic process | 10/200 | 3.23 | 3.06e-04 | - | no |
| B | 3 | GO:0003006 | reproductive developmental process | 14/200 | 2.54 | 4.65e-04 | - | yes |
| B | 3 | GO:0007275 | multicellular organismal development | 21/200 | 1.98 | 1.02e-03 | - | yes |
| B | 3 | GO:0009791 | post-embryonic development | 13/200 | 2.20 | 2.66e-03 | - | yes |
| B | 3 | GO:0044238 | primary metabolic process | 66/200 | 1.33 | 3.41e-03 | - | yes |
| B | 5 | GO:0006508 | proteolysis | 10/200 | 2.39 | 3.49e-03 | - | no |
| B | 4 | GO:0048608 | reproductive structure development | 11/200 | 2.26 | 3.88e-03 | - | yes |
| B | 3 | GO:0009719 | response to endogenous stimulus | 11/200 | 2.13 | 5.96e-03 | - | yes |
| B | 3 | GO:0006810 | transport | 18/200 | 1.76 | 7.31e-03 | - | no |
| B | 3 | GO:0051234 | establishment of localization | 18/200 | 1.75 | 7.53e-03 | - | no |
| C | 3 | GO:0012505 | endomembrane system | 47/200 | 1.93 | 2.49e-06 | - | no |
| C | 3 | GO:0044464 | cell part | 122/200 | 1.33 | 5.16e-06 | - | no |
| C | 4 | GO:0031224 | intrinsic to membrane | 16/200 | 2.98 | 3.11e-05 | - | no |
| C | 3 | GO:0044425 | membrane part | 17/200 | 2.15 | 1.05e-03 | - | no |
| M | 3 | GO:0016787 | hydrolase activity | 34/200 | 2.18 | 5.47e-06 | - | no |
| M | 4 | GO:0022804 | active transmembrane transporter activity | 12/200 | 3.54 | 4.14e-05 | - | no |
| M | 3 | GO:0022857 | transmembrane transporter activity | 15/200 | 2.67 | 1.82e-04 | - | no |
| M | 3 | GO:0003700 | transcription factor activity | 21/200 | 2.08 | 5.24e-04 | - | yes |
| M | 5 | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 11/200 | 2.47 | 1.85e-03 | - | no |
| M | 4 | GO:0016817 | hydrolase activity, acting on acid anhydrides | 11/200 | 2.45 | 2.00e-03 | - | no |
| M | 4 | GO:0003677 | DNA binding | 24/200 | 1.73 | 3.06e-03 | 0 | yes |
| PS | 5 | PO:0009052 | pedicel | 150/200 | 1.84 | 1.06e-23 | - | no |
| PS | 3 | PO:0009031 | sepal | 156/200 | 1.69 | 6.46e-21 | - | no |
| PS | 4 | PO:0009001 | fruit | 160/200 | 1.63 | 4.22e-20 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 160/200 | 1.63 | 4.22e-20 | - | yes |
| PS | 3 | PO:0009032 | petal | 150/200 | 1.71 | 6.64e-20 | - | no |
| PS | 4 | PO:0009049 | inflorescence | 165/200 | 1.58 | 7.25e-20 | - | yes |
| PS | 5 | PO:0009046 | flower | 164/200 | 1.58 | 1.48e-19 | - | yes |
| PS | 4 | PO:0009009 | embryo | 157/200 | 1.62 | 3.55e-19 | - | no |
| PS | 3 | PO:0009006 | shoot | 167/200 | 1.54 | 4.40e-19 | - | yes |
| PS | 3 | PO:0009010 | seed | 157/200 | 1.60 | 1.57e-18 | - | no |
| PS | 5 | PO:0008034 | leaf whorl | 153/200 | 1.62 | 4.84e-18 | - | no |
| PS | 4 | PO:0008033 | phyllome whorl | 153/200 | 1.62 | 4.84e-18 | - | no |
| PS | 3 | PO:0006001 | phyllome | 159/200 | 1.55 | 2.85e-17 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 136/200 | 1.62 | 2.88e-14 | - | no |
| PS | 4 | PO:0009026 | sporophyll | 140/200 | 1.56 | 2.38e-13 | - | no |
| PS | 4 | PO:0000037 | shoot apex | 133/200 | 1.55 | 6.18e-12 | - | no |
| PS | 5 | PO:0009028 | microsporophyll | 122/200 | 1.45 | 1.81e-08 | - | no |
| PS | 3 | PO:0020091 | male gametophyte | 117/200 | 1.41 | 4.12e-07 | - | no |
| PS | 3 | PO:0020092 | female gametophyte | 13/200 | 4.80 | 6.78e-07 | - | no |
| PS | 4 | PO:0009025 | leaf | 125/200 | 1.36 | 9.00e-07 | - | yes |
| PS | 4 | PO:0020096 | egg apparatus | 10/200 | 5.23 | 4.02e-06 | - | no |
| PS | 5 | PO:0020038 | petiole | 98/200 | 1.29 | 6.24e-04 | - | yes |
| PS | 4 | PO:0005679 | epidermis | 24/200 | 1.94 | 6.61e-04 | - | yes |
| PS | 3 | PO:0009014 | dermal tissue | 24/200 | 1.94 | 6.65e-04 | - | yes |
| PS | 3 | PO:0009013 | meristem | 100/200 | 1.24 | 1.93e-03 | - | yes |
| PS | 5 | PO:0006035 | shoot epidermis | 21/200 | 1.88 | 1.98e-03 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 101/200 | 1.23 | 3.18e-03 | - | yes |
| PS | 4 | PO:0000293 | guard cell | 19/200 | 1.77 | 5.80e-03 | - | yes |
| PS | 4 | PO:0000351 | guard mother cell | 19/200 | 1.76 | 6.08e-03 | - | yes |
| PS | 3 | PO:0000070 | meristemoid | 19/200 | 1.76 | 6.19e-03 | - | yes |
| PS | 5 | PO:0008037 | seedling | 105/200 | 1.19 | 7.11e-03 | - | no |
| PS | 5 | PO:0006016 | leaf epidermis | 19/200 | 1.71 | 8.22e-03 | - | yes |
| PS | 3 | PO:0004013 | epidermal cell | 20/200 | 1.68 | 8.57e-03 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 93/200 | 1.20 | 9.45e-03 | - | no |
| PS | 5 | PO:0000349 | epidermal initial | 19/200 | 1.68 | 9.49e-03 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 149/200 | 1.82 | 1.38e-22 | - | no |
| PG | 4 | PO:0007631 | embryo development stages | 153/200 | 1.70 | 2.31e-20 | - | no |
| PG | 4 | PO:0007616 | 4 anthesis | 159/200 | 1.64 | 3.17e-20 | - | no |
| PG | 3 | PO:0001170 | seed development stages | 153/200 | 1.69 | 3.85e-20 | - | no |
| PG | 3 | PO:0007615 | flower development stages | 161/200 | 1.54 | 2.42e-17 | - | no |
| PG | 5 | PO:0007604 | corolla developmental stages | 155/200 | 1.57 | 6.58e-17 | - | no |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 157/200 | 1.54 | 1.85e-16 | - | no |
| PG | 5 | PO:0001081 | F mature embryo stage | 135/200 | 1.70 | 5.67e-16 | - | no |
| PG | 5 | PO:0004507 | D bilateral stage | 134/200 | 1.63 | 4.57e-14 | - | no |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 132/200 | 1.59 | 7.68e-13 | - | no |
| PG | 5 | PO:0007133 | leaf production | 100/200 | 1.19 | 9.64e-03 | - | no |
| PG | 4 | PO:0007112 | 1 main shoot growth | 100/200 | 1.19 | 9.71e-03 | - | no |
| KW | 0 | fatty | - | 11/200 | 8.28 | 1.12e-08 | - | no |
| KW | 0 | endomembrane | - | 47/200 | 1.99 | 1.15e-06 | - | no |
| KW | 0 | globular | - | 15/200 | 4.00 | 1.37e-06 | - | no |
| KW | 0 | system | - | 47/200 | 1.94 | 2.30e-06 | - | no |
| KW | 0 | endopeptidase | - | 10/200 | 5.31 | 3.46e-06 | - | no |
| KW | 0 | molecular | - | 10/200 | 4.72 | 1.05e-05 | - | no |
| KW | 0 | encodes | - | 46/200 | 1.80 | 2.13e-05 | - | yes |
| KW | 0 | proteolysis | - | 10/200 | 4.09 | 3.97e-05 | - | no |
| KW | 0 | factor | - | 34/200 | 1.94 | 6.02e-05 | 0 | yes |
| KW | 0 | catalytic | - | 23/200 | 2.26 | 8.70e-05 | - | no |
| KW | 0 | glycosyl | - | 13/200 | 3.05 | 1.09e-04 | - | no |
| KW | 0 | peptidase | - | 12/200 | 3.01 | 2.03e-04 | - | no |
| KW | 0 | transmembrane | - | 17/200 | 2.34 | 3.91e-04 | - | no |
| KW | 0 | development | - | 16/200 | 2.29 | 6.89e-04 | - | no |
| KW | 0 | transcription | - | 26/200 | 1.79 | 1.37e-03 | 0 | yes |
| KW | 0 | anthesis | - | 24/200 | 1.83 | 1.52e-03 | - | no |
| KW | 0 | regulation | - | 24/200 | 1.82 | 1.65e-03 | - | no |
| KW | 0 | transporter | - | 15/200 | 2.16 | 1.77e-03 | - | no |
| KW | 0 | biosynthetic | - | 15/200 | 2.10 | 2.33e-03 | - | no |
| KW | 0 | member | - | 20/200 | 1.83 | 3.34e-03 | - | no |
| KW | 0 | transferase | - | 13/200 | 2.12 | 3.66e-03 | - | no |
| KW | 0 | conserved | - | 23/200 | 1.70 | 4.63e-03 | - | no |
| KW | 0 | differentiation | - | 25/200 | 1.65 | 4.79e-03 | - | yes |
| KW | 0 | hydrolase | - | 14/200 | 1.92 | 6.85e-03 | - | no |
| KW | 0 | process | - | 31/200 | 1.51 | 7.38e-03 | - | no |
| KW | 0 | pollen | - | 16/200 | 1.79 | 8.53e-03 | - | no |
| KW | 0 | transport | - | 17/200 | 1.75 | 9.14e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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