ARTADE2 予測遺伝子モデル データベースTAIR_gene_model (on ARTADE2DB) (ver. TAIR9)Genes with tiling-array support (Annotated)
AT5G26760.1http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u522676001000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT3G05090.1 | 0.846223 | transducin family protein / WD-40 repeat family protein | OMAT3P101630 | - | - | - |
| AT5G47520.1 | 0.839815 | AtRABA5a (Arabidopsis Rab GTPase homolog A5a) | - | - | - | - |
| AT1G75340.1 | 0.83035 | zinc finger (CCCH-type) family protein | - | - | - | - |
| AT5G19450.1 | 0.816718 | CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19) | OMAT5P105710 | - | - | - |
| AT2G23460.1 | 0.815206 | XLG1 (EXTRA-LARGE G-PROTEIN 1) | OMAT2P004710 | - | - | - |
| AT4G15080.1 | 0.812844 | zinc finger (DHHC type) family protein | OMAT4P103470 | - | - | - |
| AT4G27100.1 | 0.811111 | RAB GTPase activator | - | - | - | - |
| AT2G26300.1 | 0.808857 | GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1) | OMAT2P005620 | - | - | - |
| AT4G14905.1 | 0.807393 | kelch repeat-containing F-box family protein | - | - | - | - |
| AT2G13370.1 | 0.806083 | CHR5 (chromatin remodeling 5) | OMAT2P101500 | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT2G35075.1 | -0.836113 | unknown protein | - | - | - | - |
| AT5G62660.1 | -0.80507 | F-box family protein | - | - | - | - |
| AT5G17960.1 | -0.786181 | DC1 domain-containing protein | - | - | - | - |
| AT5G31891.1 | -0.780325 | transposable element gene | - | - | - | - |
| AT2G12620.1 | -0.778936 | transposable element gene | - | - | - | - |
| AT1G22275.1 | -0.774854 | ZYP1b | - | - | - | - |
| AT5G09930.1 | -0.774505 | ATGCN2 | - | - | - | - |
| AT4G00315.1 | -0.772305 | F-box family protein | - | - | - | - |
| AT3G42080.1 | -0.770578 | transposable element gene | - | - | - | - |
| AT1G70050.1 | -0.769259 | pre-tRNA | - | - | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 3.97e-26 | :20 terms with high significance | |
| 3.97e-26 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0016192 | vesicle-mediated transport | 10/200 | 6.93 | 2.58e-07 | - | no |
| B | 4 | GO:0046907 | intracellular transport | 12/200 | 5.05 | 9.19e-07 | - | no |
| B | 3 | GO:0009653 | anatomical structure morphogenesis | 14/200 | 4.16 | 1.70e-06 | - | no |
| B | 3 | GO:0023033 | signaling pathway | 14/200 | 4.14 | 1.81e-06 | - | no |
| B | 3 | GO:0007275 | multicellular organismal development | 27/200 | 2.54 | 2.78e-06 | - | no |
| B | 3 | GO:0051649 | establishment of localization in cell | 12/200 | 4.45 | 3.67e-06 | - | no |
| B | 3 | GO:0051641 | cellular localization | 12/200 | 4.08 | 9.38e-06 | - | no |
| B | 4 | GO:0031323 | regulation of cellular metabolic process | 25/200 | 2.31 | 3.20e-05 | - | no |
| B | 4 | GO:0048513 | organ development | 14/200 | 3.16 | 4.36e-05 | - | no |
| B | 4 | GO:0048731 | system development | 14/200 | 3.16 | 4.42e-05 | - | no |
| B | 3 | GO:0050789 | regulation of biological process | 34/200 | 1.97 | 4.74e-05 | - | no |
| B | 3 | GO:0019222 | regulation of metabolic process | 26/200 | 2.21 | 5.03e-05 | - | no |
| B | 3 | GO:0048856 | anatomical structure development | 21/200 | 2.35 | 9.85e-05 | - | no |
| B | 3 | GO:0009791 | post-embryonic development | 16/200 | 2.70 | 1.03e-04 | - | no |
| B | 3 | GO:0050794 | regulation of cellular process | 30/200 | 1.97 | 1.26e-04 | - | no |
| B | 3 | GO:0006810 | transport | 22/200 | 2.15 | 2.57e-04 | - | no |
| B | 3 | GO:0051234 | establishment of localization | 22/200 | 2.14 | 2.68e-04 | - | no |
| B | 3 | GO:0044237 | cellular metabolic process | 68/200 | 1.44 | 3.19e-04 | - | no |
| B | 3 | GO:0006996 | organelle organization | 10/200 | 3.00 | 5.80e-04 | - | no |
| B | 4 | GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 30/200 | 1.78 | 7.17e-04 | - | no |
| B | 5 | GO:0006464 | protein modification process | 21/200 | 2.02 | 7.83e-04 | - | no |
| B | 4 | GO:0080090 | regulation of primary metabolic process | 21/200 | 1.99 | 9.09e-04 | - | no |
| B | 4 | GO:0043412 | macromolecule modification | 22/200 | 1.94 | 1.03e-03 | - | no |
| B | 4 | GO:0044248 | cellular catabolic process | 10/200 | 2.77 | 1.09e-03 | - | no |
| B | 5 | GO:0006796 | phosphate metabolic process | 15/200 | 2.26 | 1.11e-03 | - | no |
| B | 4 | GO:0006793 | phosphorus metabolic process | 15/200 | 2.26 | 1.12e-03 | - | no |
| B | 5 | GO:0019219 | regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 20/200 | 1.99 | 1.15e-03 | - | no |
| B | 4 | GO:0051171 | regulation of nitrogen compound metabolic process | 20/200 | 1.97 | 1.31e-03 | - | no |
| B | 3 | GO:0003006 | reproductive developmental process | 13/200 | 2.36 | 1.38e-03 | - | no |
| B | 4 | GO:0034641 | cellular nitrogen compound metabolic process | 32/200 | 1.64 | 1.82e-03 | - | no |
| B | 3 | GO:0043170 | macromolecule metabolic process | 55/200 | 1.42 | 1.90e-03 | - | no |
| B | 4 | GO:0044260 | cellular macromolecule metabolic process | 51/200 | 1.45 | 1.90e-03 | - | no |
| B | 3 | GO:0006807 | nitrogen compound metabolic process | 32/200 | 1.61 | 2.50e-03 | - | no |
| B | 3 | GO:0022414 | reproductive process | 13/200 | 2.16 | 3.12e-03 | - | no |
| B | 3 | GO:0044238 | primary metabolic process | 66/200 | 1.33 | 3.41e-03 | - | no |
| B | 4 | GO:0048608 | reproductive structure development | 11/200 | 2.26 | 3.88e-03 | - | no |
| B | 5 | GO:0016070 | RNA metabolic process | 16/200 | 1.88 | 5.39e-03 | - | no |
| B | 4 | GO:0019538 | protein metabolic process | 34/200 | 1.47 | 7.97e-03 | - | no |
| B | 5 | GO:0090304 | nucleic acid metabolic process | 24/200 | 1.60 | 8.50e-03 | - | no |
| B | 3 | GO:0009056 | catabolic process | 10/200 | 2.10 | 8.89e-03 | - | no |
| B | 5 | GO:0032774 | RNA biosynthetic process | 11/200 | 2.01 | 9.43e-03 | - | no |
| C | 3 | GO:0005622 | intracellular | 85/200 | 1.60 | 3.83e-07 | - | no |
| C | 5 | GO:0005829 | cytosol | 16/200 | 3.87 | 1.05e-06 | - | no |
| C | 3 | GO:0044424 | intracellular part | 79/200 | 1.55 | 4.53e-06 | - | no |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 67/200 | 1.53 | 5.98e-05 | - | no |
| C | 3 | GO:0043227 | membrane-bounded organelle | 67/200 | 1.52 | 6.01e-05 | - | no |
| C | 3 | GO:0043229 | intracellular organelle | 69/200 | 1.49 | 8.69e-05 | - | no |
| C | 5 | GO:0005634 | nucleus | 30/200 | 1.92 | 1.95e-04 | - | no |
| C | 4 | GO:0044444 | cytoplasmic part | 54/200 | 1.56 | 2.32e-04 | - | no |
| C | 4 | GO:0005886 | plasma membrane | 25/200 | 2.02 | 2.85e-04 | - | no |
| C | 4 | GO:0005737 | cytoplasm | 55/200 | 1.47 | 8.61e-04 | - | no |
| C | 3 | GO:0044464 | cell part | 111/200 | 1.21 | 2.24e-03 | - | no |
| C | 3 | GO:0016020 | membrane | 39/200 | 1.42 | 8.38e-03 | - | no |
| M | 5 | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | 21/200 | 3.38 | 3.19e-07 | - | no |
| M | 5 | GO:0016301 | kinase activity | 23/200 | 2.86 | 1.93e-06 | - | no |
| M | 3 | GO:0005515 | protein binding | 35/200 | 2.24 | 2.16e-06 | - | no |
| M | 3 | GO:0000166 | nucleotide binding | 31/200 | 2.35 | 2.99e-06 | - | no |
| M | 4 | GO:0016772 | transferase activity, transferring phosphorus-containing groups | 24/200 | 2.62 | 5.65e-06 | - | no |
| M | 3 | GO:0016740 | transferase activity | 32/200 | 1.96 | 8.45e-05 | - | no |
| M | 5 | GO:0046872 | metal ion binding | 27/200 | 1.99 | 2.17e-04 | - | no |
| M | 4 | GO:0017076 | purine nucleotide binding | 22/200 | 2.12 | 3.08e-04 | - | no |
| M | 4 | GO:0043169 | cation binding | 27/200 | 1.88 | 5.38e-04 | - | no |
| M | 3 | GO:0043167 | ion binding | 27/200 | 1.88 | 5.38e-04 | - | no |
| M | 5 | GO:0032555 | purine ribonucleotide binding | 20/200 | 2.04 | 8.85e-04 | - | no |
| M | 4 | GO:0032553 | ribonucleotide binding | 20/200 | 2.04 | 8.85e-04 | - | no |
| M | 5 | GO:0030554 | adenyl nucleotide binding | 17/200 | 1.88 | 4.43e-03 | - | no |
| M | 4 | GO:0001883 | purine nucleoside binding | 17/200 | 1.88 | 4.43e-03 | - | no |
| M | 3 | GO:0001882 | nucleoside binding | 17/200 | 1.87 | 4.55e-03 | - | no |
| PS | 4 | PO:0000230 | inflorescence meristem | 157/200 | 2.02 | 3.38e-31 | - | yes |
| PS | 3 | PO:0009013 | meristem | 158/200 | 1.97 | 4.97e-30 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 160/200 | 1.91 | 5.27e-29 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 157/200 | 1.93 | 1.35e-28 | - | yes |
| PS | 5 | PO:0020038 | petiole | 152/200 | 2.00 | 1.39e-28 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 153/200 | 1.98 | 1.64e-28 | - | yes |
| PS | 4 | PO:0009047 | stem | 158/200 | 1.87 | 3.05e-27 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 147/200 | 2.00 | 6.05e-27 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 156/200 | 1.88 | 9.31e-27 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 155/200 | 1.88 | 2.20e-26 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 158/200 | 1.84 | 3.97e-26 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 155/200 | 1.85 | 1.93e-25 | - | yes |
| PS | 3 | PO:0009032 | petal | 158/200 | 1.80 | 4.26e-25 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 160/200 | 1.78 | 5.23e-25 | - | yes |
| PS | 5 | PO:0008037 | seedling | 158/200 | 1.79 | 1.06e-24 | - | yes |
| PS | 4 | PO:0009025 | leaf | 160/200 | 1.74 | 8.41e-24 | - | yes |
| PS | 3 | PO:0009005 | root | 157/200 | 1.74 | 5.81e-23 | - | yes |
| PS | 3 | PO:0009031 | sepal | 158/200 | 1.71 | 3.31e-22 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 159/200 | 1.69 | 9.76e-22 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 159/200 | 1.69 | 9.76e-22 | - | yes |
| PS | 4 | PO:0009009 | embryo | 160/200 | 1.66 | 4.63e-21 | - | yes |
| PS | 3 | PO:0009010 | seed | 160/200 | 1.64 | 2.20e-20 | - | yes |
| PS | 4 | PO:0009001 | fruit | 160/200 | 1.63 | 4.22e-20 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 160/200 | 1.63 | 4.22e-20 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 161/200 | 1.57 | 1.82e-18 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 161/200 | 1.54 | 2.21e-17 | - | yes |
| PS | 5 | PO:0009046 | flower | 160/200 | 1.54 | 4.16e-17 | - | yes |
| PS | 3 | PO:0009006 | shoot | 162/200 | 1.49 | 4.91e-16 | - | yes |
| PS | 3 | PO:0000084 | sperm cell | 76/200 | 2.34 | 2.76e-14 | - | no |
| PS | 3 | PO:0020097 | generative cell | 76/200 | 2.34 | 2.76e-14 | - | no |
| PS | 4 | PO:0006345 | pollen tube | 65/200 | 2.23 | 3.88e-11 | - | no |
| PS | 4 | PO:0000293 | guard cell | 24/200 | 2.23 | 7.93e-05 | - | no |
| PS | 4 | PO:0000351 | guard mother cell | 24/200 | 2.22 | 8.51e-05 | - | no |
| PS | 3 | PO:0000070 | meristemoid | 24/200 | 2.22 | 8.73e-05 | - | no |
| PS | 4 | PO:0005679 | epidermis | 26/200 | 2.10 | 1.16e-04 | - | no |
| PS | 3 | PO:0009014 | dermal tissue | 26/200 | 2.10 | 1.17e-04 | - | no |
| PS | 5 | PO:0006016 | leaf epidermis | 24/200 | 2.16 | 1.33e-04 | - | no |
| PS | 5 | PO:0006035 | shoot epidermis | 24/200 | 2.14 | 1.48e-04 | - | no |
| PS | 3 | PO:0004013 | epidermal cell | 25/200 | 2.10 | 1.58e-04 | - | no |
| PS | 5 | PO:0000349 | epidermal initial | 24/200 | 2.13 | 1.65e-04 | - | no |
| PS | 4 | PO:0004011 | initial cell | 24/200 | 2.11 | 1.82e-04 | - | no |
| PS | 3 | PO:0004010 | meristematic cell | 24/200 | 2.11 | 1.86e-04 | - | no |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 153/200 | 1.99 | 9.45e-29 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 153/200 | 1.99 | 1.01e-28 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 158/200 | 1.90 | 3.65e-28 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 157/200 | 1.91 | 4.44e-28 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 157/200 | 1.91 | 7.35e-28 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 154/200 | 1.94 | 1.27e-27 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 157/200 | 1.87 | 1.11e-26 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 157/200 | 1.87 | 1.14e-26 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 157/200 | 1.85 | 2.76e-26 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 159/200 | 1.77 | 2.80e-24 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 159/200 | 1.76 | 4.88e-24 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 160/200 | 1.65 | 7.29e-21 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 159/200 | 1.61 | 2.86e-19 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 161/200 | 1.58 | 8.13e-19 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 162/200 | 1.55 | 6.10e-18 | - | yes |
| PG | 5 | PO:0007605 | androecium developmental stages | 66/200 | 2.25 | 1.63e-11 | - | no |
| KW | 0 | cytosol | - | 15/200 | 6.08 | 4.58e-09 | - | no |
| KW | 0 | gtpase | - | 12/200 | 6.70 | 3.67e-08 | - | no |
| KW | 0 | ipr016024 | - | 12/200 | 6.50 | 5.19e-08 | - | no |
| KW | 0 | armadillo | - | 12/200 | 6.42 | 6.04e-08 | - | no |
| KW | 0 | nuclear | - | 12/200 | 3.90 | 1.49e-05 | - | no |
| KW | 0 | regulation | - | 29/200 | 2.19 | 2.22e-05 | - | no |
| KW | 0 | nucleotide | - | 18/200 | 2.83 | 2.38e-05 | - | no |
| KW | 0 | ipr017441 | - | 14/200 | 3.26 | 3.09e-05 | - | no |
| KW | 0 | ipr002290 | - | 11/200 | 3.73 | 4.61e-05 | - | no |
| KW | 0 | helical | - | 11/200 | 3.65 | 5.69e-05 | - | no |
| KW | 0 | kinase | - | 24/200 | 2.27 | 5.84e-05 | - | no |
| KW | 0 | serine | - | 21/200 | 2.36 | 9.29e-05 | - | no |
| KW | 0 | alpha | - | 18/200 | 2.47 | 1.45e-04 | - | no |
| KW | 0 | finger | - | 21/200 | 2.27 | 1.58e-04 | - | no |
| KW | 0 | ipr000719 | - | 16/200 | 2.57 | 1.90e-04 | - | no |
| KW | 0 | threonine | - | 18/200 | 2.40 | 2.05e-04 | - | no |
| KW | 0 | intracellular | - | 14/200 | 2.71 | 2.34e-04 | - | no |
| KW | 0 | mediated | - | 11/200 | 3.11 | 2.52e-04 | - | no |
| KW | 0 | processes | - | 10/200 | 3.30 | 2.59e-04 | - | no |
| KW | 0 | ipr011009 | - | 16/200 | 2.47 | 2.92e-04 | - | no |
| KW | 0 | ipr008271 | - | 13/200 | 2.66 | 4.34e-04 | - | no |
| KW | 0 | plasma | - | 23/200 | 2.01 | 5.12e-04 | - | no |
| KW | 0 | nucleus | - | 25/200 | 1.94 | 5.26e-04 | - | no |
| KW | 0 | active | - | 18/200 | 2.20 | 6.02e-04 | - | no |
| KW | 0 | ligase | - | 11/200 | 2.82 | 6.07e-04 | - | no |
| KW | 0 | small | - | 11/200 | 2.73 | 8.00e-04 | - | no |
| KW | 0 | ipr017442 | - | 13/200 | 2.47 | 9.06e-04 | - | no |
| KW | 0 | nucleic | - | 15/200 | 2.29 | 9.44e-04 | - | no |
| KW | 0 | transport | - | 19/200 | 1.95 | 1.89e-03 | - | no |
| KW | 0 | ubiquitin | - | 11/200 | 2.45 | 2.00e-03 | - | no |
| KW | 0 | peptidase | - | 10/200 | 2.51 | 2.36e-03 | - | no |
| KW | 0 | motif | - | 11/200 | 2.26 | 3.77e-03 | - | no |
| KW | 0 | development | - | 14/200 | 2.01 | 4.60e-03 | - | no |
| KW | 0 | complex | - | 16/200 | 1.89 | 5.17e-03 | - | no |
| KW | 0 | region | - | 24/200 | 1.66 | 5.24e-03 | - | no |
| KW | 0 | phosphorylation | - | 12/200 | 1.95 | 9.24e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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