AT1G54890

http://metadb.riken.jp/db/SciNetS_rib102i/crib102u0rib102u10000054890i

AT1G54890

TAIR10 Locus

status_type

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u5i

description

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u13i

• Late embryogenesis abundant (LEA) protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Root cap (InterPro:IPR009646); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) protein-related (TAIR:AT5G54370.1); Has 157 Blast hits to 155 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 157; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

label

http://www.w3.org/2000/01/rdf-schema#label

• AT1G54890

attributionURL

http://creativecommons.org/ns#attributionURL

• http://arabidopsis.org/servlets/TairObject?type=locus&name=AT1G54890

locus region

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u3i

• Chr1:20463083-20464470 +
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u2rib102u25907i

gene type

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u17i

• protein_coding
  http://metadb.riken.jp/db/SciNetS_ria253i/cria253u10i

species

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u18i

• Arabidopsis thaliana
  http://metadb.riken.jp/db/SciNetS_rib166i/crib166u26rib166u3702i

seeAlso

http://www.w3.org/2000/01/rdf-schema#seeAlso

• http://database.riken.jp/sw/item/crib102u0rib102u10000054890i

synonym

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u14i

relationship

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u6i

TAIR10 Gene Model

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u2i

• AT1G54890.1
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u1rib102u10000548901i

RAFL cDNA

http://metadb.riken.jp/db/SciNetS_ria11i/pria11s1i

• RAFL16-86-C19
  http://metadb.riken.jp/db/SciNetS_ria11i/cria11s1ria11u14713i

ARTADE2_Gene (Ver.20100511)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• OMAT1P015260
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u100152600000i

TAIR_gene_model (on ARTADE2DB) (ver. TAIR9)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• AT1G54890.1
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u125489001000i

Genes with tiling-array support (Annotated)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• AT1G54890.1
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u125489001000i

TAIR によるGO注釈

http://metadb.riken.jp/db/SciNetS_ria269i/pria269u1i

• AT1G54890:has:molecular_function
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u29620i
• AT1G54890:involved in:biological_process
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u29619i
• AT1G54890:located in:extracellular region
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u29621i

TAIRによるPO注釈（生育ステージ）

http://metadb.riken.jp/db/SciNetS_ria270i/pria270u1i

• AT1G54890:expressed during:petal differentiation and expansion stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u146337i
• AT1G54890:expressed during:4 anthesis
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u162798i

TAIRによるPO注釈（器官名）

http://metadb.riken.jp/db/SciNetS_ria273i/pria273u1i

• AT1G54890:expressed in:sepal
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u157028i
• AT1G54890:expressed in:root
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u59228i
• AT1G54890:expressed in:stamen
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u128935i
• AT1G54890:expressed in:flower
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u187170i
• AT1G54890:expressed in:stem
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u202955i
• AT1G54890:expressed in:inflorescence meristem
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u33428i

A.thaliana cDNA

http://metadb.riken.jp/db/SciNetS_ria277i/pria277u2i

• NM_104362
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u29632i
• AK229468
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u5533i

AT_TAIR_gene

http://metadb.riken.jp/db/SciNetS_rib101i/prib101s4i

• AT1G54890.1
  http://metadb.riken.jp/db/SciNetS_rib101i/crib101u0rib101u10000548901i

RIKEN A.thaliana gene family

http://metadb.riken.jp/db/SciNetS_rib123i/prib123s1i

• Cluster2350
  http://metadb.riken.jp/db/SciNetS_rib123i/crib123s1rib123u2350i

Domain Annotation(A.thaliana)

http://metadb.riken.jp/db/SciNetS_rib126i/prib126u1i

• Root_cap
  http://metadb.riken.jp/db/SciNetS_rib126i/crib126u1rib126u1116i

RIKEN Ortholog(A.thaliana and Rice)

http://metadb.riken.jp/db/SciNetS_rib127i/prib127u1i

• At-Os_Ortholog2426
  http://metadb.riken.jp/db/SciNetS_rib127i/crib127u1rib127u2426i