ARTADE2 予測遺伝子モデル データベースARTADE2_Gene (Ver.20100511)

OMAT1P004060
http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u100040600000i

OMAT1P004060(↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
OMAT1P0215400.874906-AT1G74210glycerophosphoryl diester phosphodiesterase family protein--
OMAT1P0167500.853181-AT1G61670FUNCTIONS IN: molecular_function unknown--
OMAT5P0161600.853026-AT5G54800GPT1--
OMAT3P0119000.846293-AT3G46220unknown protein--
OMAT2P1017900.843232-AT2G15440unknown protein--
OMAT2P1028400.837153-AT2G19570CDA1 (CYTIDINE DEAMINASE 1)--
OMAT3P0179500.834041-AT3G62830AUD1--
OMAT3P0158400.830684-AT3G56740ubiquitin-associated (UBA)/TS-N domain-containing protein--
OMAT1P0215300.830361-AT1G74210glycerophosphoryl diester phosphodiesterase family protein--
OMAT3P0094900.828484-AT3G25260proton-dependent oligopeptide transport (POT) family protein--
Negatively Correlated Genes
GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
OMAT2P107940-0.874526-AT2G35390ribose-phosphate pyrophosphokinase 1 / phosphoribosyl diphosphate synthetase 1 (PRSI)--
OMAT2P001210-0.850863-AT2G05380GRP3S (GLYCINE-RICH PROTEIN 3 SHORT ISOFORM)--
OMAT4P100650-0.846439-AT4G01800preprotein translocase secA subunit, putative--
OMAT1P112660-0.844197-AT1G52000jacalin lectin family protein--
OMAT5P118140-0.843497---AT5G65960unknown protein
OMAT4P104180-0.840988-AT4G17040ATP-dependent Clp protease proteolytic subunit, putative--
OMAT3P108800-0.833293-AT3G26900shikimate kinase family protein--
OMAT1P101320-0.831385-AT1G05010EFE (ETHYLENE-FORMING ENZYME)--
OMAT2P105820-0.824443-AT2G28800ALB3 (ALBINO 3)--
OMAT2P102670-0.823005-AT2G18710SCY1 (SecY Homolog 1)--

Get whole results

Over-Representation Analysis Result

p-value <= 1.00e-06:20 terms with high significance
1.00e-06 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1)Depth of the term in ontology treeID/TermDescriptionNumber of genesOver-Representative rate (*2)p-value (*3)PosMed p-value (*4)
(Link to PosMed)		Found on gene annotation
B3GO:0019748secondary metabolic process10/2004.322.40e-05-no
B3GO:0044281small molecule metabolic process20/2002.232.82e-04-no
B3GO:0007275multicellular organismal development22/2002.074.24e-04-no
B4GO:0048513organ development12/2002.715.55e-04-no
B4GO:0048731system development12/2002.715.62e-04-no
B4GO:0005975carbohydrate metabolic process13/2002.508.12e-04-yes
B4GO:0006629lipid metabolic process11/2002.531.53e-03-no
B3GO:0048856anatomical structure development18/2002.011.70e-03-no
B4GO:0044283small molecule biosynthetic process11/2002.422.18e-03-no
B4GO:0051171regulation of nitrogen compound metabolic process19/2001.882.98e-03-no
B5GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process18/2001.805.83e-03-no
B4GO:0009889regulation of biosynthetic process18/2001.795.94e-03-no
B5GO:0031326regulation of cellular biosynthetic process18/2001.795.94e-03-no
B4GO:0031323regulation of cellular metabolic process19/2001.766.12e-03-no
B4GO:0080090regulation of primary metabolic process18/2001.719.60e-03-no
C3GO:0044464cell part129/2001.413.03e-08-yes
C3GO:0012505endomembrane system45/2001.851.31e-05-no
C3GO:0016020membrane41/2001.502.87e-033.64E-21yes
M3GO:0016491oxidoreductase activity19/2002.253.28e-04-no
M3GO:0003700transcription factor activity20/2001.981.26e-03-no
M4GO:0003677DNA binding23/2001.666.11e-03-no
M4GO:0016788hydrolase activity, acting on ester bonds12/2002.027.08e-03-no
PS3PO:0009006shoot150/2001.384.14e-10-yes
PS4PO:0009001fruit140/2001.426.95e-10-yes
PS3PO:0006342infructescence140/2001.426.95e-10-yes
PS5PO:0009046flower145/2001.399.40e-10-yes
PS4PO:0009049inflorescence145/2001.391.60e-09-yes
PS3PO:0009010seed137/2001.406.50e-09-yes
PS4PO:0009009embryo135/2001.401.33e-08-yes
PS3PO:0009032petal124/2001.417.69e-08-yes
PS3PO:0006001phyllome138/2001.351.16e-07-yes
PS5PO:0009052pedicel113/2001.392.14e-06-yes
PS4PO:0009026sporophyll121/2001.343.74e-06-yes
PS5PO:0008034leaf whorl125/2001.334.47e-06-yes
PS4PO:0008033phyllome whorl125/2001.334.47e-06-yes
PS5PO:0009027megasporophyll114/2001.366.72e-06-yes
PS3PO:0009031sepal122/2001.329.13e-06-yes
PS3PO:0009005root118/2001.312.52e-05-yes
PS3PO:0009013meristem106/2001.329.10e-05-yes
PS4PO:0000230inflorescence meristem101/2001.303.10e-04-yes
PS4PO:0000037shoot apex108/2001.266.92e-04-yes
PS5PO:0009028microsporophyll105/2001.251.01e-03-yes
PS3PO:0020091male gametophyte101/2001.223.97e-03-yes
PS5PO:0008037seedling106/2001.204.75e-03-yes
PS4PO:0009047stem102/2001.214.81e-03-yes
PS4PO:0009025leaf108/2001.179.40e-03-yes
PG5PO:0007604corolla developmental stages138/2001.405.71e-09-yes
PG3PO:0001170seed development stages129/2001.431.30e-08-yes
PG4PO:00076003 floral organ development stages139/2001.363.11e-08-yes
PG3PO:0007615flower development stages141/2001.355.47e-08-yes
PG4PO:00076164 anthesis133/2001.378.87e-08-yes
PG5PO:0001185C globular stage118/2001.449.96e-08-yes
PG4PO:0007631embryo development stages125/2001.392.26e-07-yes
PG5PO:0004507D bilateral stage107/2001.301.66e-04-yes
PG5PO:0001078E expanded cotyledon stage107/2001.292.36e-04-yes
PG5PO:0001081F mature embryo stage103/2001.292.98e-04-yes
KW0globular-17/2004.535.13e-08-no
KW0differentiation-37/2002.451.17e-07-no
KW0expansion-34/2002.311.41e-06-no
KW0system-47/2001.942.30e-06-no
KW0petal-33/2002.263.29e-06-no
KW0endomembrane-45/2001.906.43e-06-no
KW0stage-38/2001.961.77e-05-no
KW0development-19/2002.722.57e-05-no
KW0process-39/2001.902.76e-05-yes
KW0anthesis-28/2002.135.12e-05-no
KW0metabolic-23/2002.005.28e-04-yes
KW0region-27/2001.875.86e-04-no
KW0lipid-10/2002.917.32e-04-no
KW0biosynthetic-16/2002.248.94e-04-no
KW0hydrolase-16/2002.191.12e-03-no
KW0membrane-41/2001.541.68e-033.64E-21yes
KW0encodes-39/2001.532.51e-03-yes
KW0cotyledon-12/2002.282.60e-03-no
KW0transmembrane-15/2002.072.72e-03-no
KW0transcription-25/2001.722.82e-03-no
KW0catalytic-19/2001.873.10e-03-no
KW0glycosyl-10/2002.353.96e-03-no
KW0embryo-14/2002.024.43e-03-no
KW0flower-15/2001.964.44e-03-no
KW0conserved-23/2001.704.63e-03-yes
KW0function-25/2001.607.10e-03-no
KW0expression-10/2002.079.78e-03-no
(*1)[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2)([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3)P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4)PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
Top Page

OMAT1P004060

ARTADE2_Gene (Ver.20100511)

status_about_related_gene
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s43i
  • with_AGI_gene
Correlation_Score
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s9i
  • 0.80362
description
http://purl.org/dc/elements/1.1/description
  • OMAT1P004060(↑ Click "Links", if this line appears at the beginning.)

    Other supporting information

    Gene Model

    Correlation Plot


    Expression profile (Values are plotted in Log(2) values.)

    Genes with related expresssion profiles.
    Positively Correlated Genes
    GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
    OMAT1P0215400.874906-AT1G74210glycerophosphoryl diester phosphodiesterase family protein--
    OMAT1P0167500.853181-AT1G61670FUNCTIONS IN: molecular_function unknown--
    OMAT5P0161600.853026-AT5G54800GPT1--
    OMAT3P0119000.846293-AT3G46220unknown protein--
    OMAT2P1017900.843232-AT2G15440unknown protein--
    OMAT2P1028400.837153-AT2G19570CDA1 (CYTIDINE DEAMINASE 1)--
    OMAT3P0179500.834041-AT3G62830AUD1--
    OMAT3P0158400.830684-AT3G56740ubiquitin-associated (UBA)/TS-N domain-containing protein--
    OMAT1P0215300.830361-AT1G74210glycerophosphoryl diester phosphodiesterase family protein--
    OMAT3P0094900.828484-AT3G25260proton-dependent oligopeptide transport (POT) family protein--
    Negatively Correlated Genes
    GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
    OMAT2P107940-0.874526-AT2G35390ribose-phosphate pyrophosphokinase 1 / phosphoribosyl diphosphate synthetase 1 (PRSI)--
    OMAT2P001210-0.850863-AT2G05380GRP3S (GLYCINE-RICH PROTEIN 3 SHORT ISOFORM)--
    OMAT4P100650-0.846439-AT4G01800preprotein translocase secA subunit, putative--
    OMAT1P112660-0.844197-AT1G52000jacalin lectin family protein--
    OMAT5P118140-0.843497---AT5G65960unknown protein
    OMAT4P104180-0.840988-AT4G17040ATP-dependent Clp protease proteolytic subunit, putative--
    OMAT3P108800-0.833293-AT3G26900shikimate kinase family protein--
    OMAT1P101320-0.831385-AT1G05010EFE (ETHYLENE-FORMING ENZYME)--
    OMAT2P105820-0.824443-AT2G28800ALB3 (ALBINO 3)--
    OMAT2P102670-0.823005-AT2G18710SCY1 (SecY Homolog 1)--

    Get whole results

    Over-Representation Analysis Result

    p-value <= 1.00e-06:20 terms with high significance
    1.00e-06 < p-value <= 8.76e-06 :With considering multiple testing correction;
    p <= 1.00e-02 / 1142
    8.76e-06 < p-value <= 1.00e-02

    Type of term (*1)Depth of the term in ontology treeID/TermDescriptionNumber of genesOver-Representative rate (*2)p-value (*3)PosMed p-value (*4)
    (Link to PosMed)    		Found on gene annotation
    B3GO:0019748secondary metabolic process10/2004.322.40e-05-no
    B3GO:0044281small molecule metabolic process20/2002.232.82e-04-no
    B3GO:0007275multicellular organismal development22/2002.074.24e-04-no
    B4GO:0048513organ development12/2002.715.55e-04-no
    B4GO:0048731system development12/2002.715.62e-04-no
    B4GO:0005975carbohydrate metabolic process13/2002.508.12e-04-yes
    B4GO:0006629lipid metabolic process11/2002.531.53e-03-no
    B3GO:0048856anatomical structure development18/2002.011.70e-03-no
    B4GO:0044283small molecule biosynthetic process11/2002.422.18e-03-no
    B4GO:0051171regulation of nitrogen compound metabolic process19/2001.882.98e-03-no
    B5GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process18/2001.805.83e-03-no
    B4GO:0009889regulation of biosynthetic process18/2001.795.94e-03-no
    B5GO:0031326regulation of cellular biosynthetic process18/2001.795.94e-03-no
    B4GO:0031323regulation of cellular metabolic process19/2001.766.12e-03-no
    B4GO:0080090regulation of primary metabolic process18/2001.719.60e-03-no
    C3GO:0044464cell part129/2001.413.03e-08-yes
    C3GO:0012505endomembrane system45/2001.851.31e-05-no
    C3GO:0016020membrane41/2001.502.87e-033.64E-21yes
    M3GO:0016491oxidoreductase activity19/2002.253.28e-04-no
    M3GO:0003700transcription factor activity20/2001.981.26e-03-no
    M4GO:0003677DNA binding23/2001.666.11e-03-no
    M4GO:0016788hydrolase activity, acting on ester bonds12/2002.027.08e-03-no
    PS3PO:0009006shoot150/2001.384.14e-10-yes
    PS4PO:0009001fruit140/2001.426.95e-10-yes
    PS3PO:0006342infructescence140/2001.426.95e-10-yes
    PS5PO:0009046flower145/2001.399.40e-10-yes
    PS4PO:0009049inflorescence145/2001.391.60e-09-yes
    PS3PO:0009010seed137/2001.406.50e-09-yes
    PS4PO:0009009embryo135/2001.401.33e-08-yes
    PS3PO:0009032petal124/2001.417.69e-08-yes
    PS3PO:0006001phyllome138/2001.351.16e-07-yes
    PS5PO:0009052pedicel113/2001.392.14e-06-yes
    PS4PO:0009026sporophyll121/2001.343.74e-06-yes
    PS5PO:0008034leaf whorl125/2001.334.47e-06-yes
    PS4PO:0008033phyllome whorl125/2001.334.47e-06-yes
    PS5PO:0009027megasporophyll114/2001.366.72e-06-yes
    PS3PO:0009031sepal122/2001.329.13e-06-yes
    PS3PO:0009005root118/2001.312.52e-05-yes
    PS3PO:0009013meristem106/2001.329.10e-05-yes
    PS4PO:0000230inflorescence meristem101/2001.303.10e-04-yes
    PS4PO:0000037shoot apex108/2001.266.92e-04-yes
    PS5PO:0009028microsporophyll105/2001.251.01e-03-yes
    PS3PO:0020091male gametophyte101/2001.223.97e-03-yes
    PS5PO:0008037seedling106/2001.204.75e-03-yes
    PS4PO:0009047stem102/2001.214.81e-03-yes
    PS4PO:0009025leaf108/2001.179.40e-03-yes
    PG5PO:0007604corolla developmental stages138/2001.405.71e-09-yes
    PG3PO:0001170seed development stages129/2001.431.30e-08-yes
    PG4PO:00076003 floral organ development stages139/2001.363.11e-08-yes
    PG3PO:0007615flower development stages141/2001.355.47e-08-yes
    PG4PO:00076164 anthesis133/2001.378.87e-08-yes
    PG5PO:0001185C globular stage118/2001.449.96e-08-yes
    PG4PO:0007631embryo development stages125/2001.392.26e-07-yes
    PG5PO:0004507D bilateral stage107/2001.301.66e-04-yes
    PG5PO:0001078E expanded cotyledon stage107/2001.292.36e-04-yes
    PG5PO:0001081F mature embryo stage103/2001.292.98e-04-yes
    KW0globular-17/2004.535.13e-08-no
    KW0differentiation-37/2002.451.17e-07-no
    KW0expansion-34/2002.311.41e-06-no
    KW0system-47/2001.942.30e-06-no
    KW0petal-33/2002.263.29e-06-no
    KW0endomembrane-45/2001.906.43e-06-no
    KW0stage-38/2001.961.77e-05-no
    KW0development-19/2002.722.57e-05-no
    KW0process-39/2001.902.76e-05-yes
    KW0anthesis-28/2002.135.12e-05-no
    KW0metabolic-23/2002.005.28e-04-yes
    KW0region-27/2001.875.86e-04-no
    KW0lipid-10/2002.917.32e-04-no
    KW0biosynthetic-16/2002.248.94e-04-no
    KW0hydrolase-16/2002.191.12e-03-no
    KW0membrane-41/2001.541.68e-033.64E-21yes
    KW0encodes-39/2001.532.51e-03-yes
    KW0cotyledon-12/2002.282.60e-03-no
    KW0transmembrane-15/2002.072.72e-03-no
    KW0transcription-25/2001.722.82e-03-no
    KW0catalytic-19/2001.873.10e-03-no
    KW0glycosyl-10/2002.353.96e-03-no
    KW0embryo-14/2002.024.43e-03-no
    KW0flower-15/2001.964.44e-03-no
    KW0conserved-23/2001.704.63e-03-yes
    KW0function-25/2001.607.10e-03-no
    KW0expression-10/2002.079.78e-03-no
    (*1)[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
    (*2)([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
    (*3)P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
    (*4)PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
    Top Page
label
http://www.w3.org/2000/01/rdf-schema#label
  • OMAT1P004060
attributionURL
http://creativecommons.org/ns#attributionURL
gene_region
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s6i
seeAlso
http://www.w3.org/2000/01/rdf-schema#seeAlso
Target_TAIR_Locus
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i
Relative_gene_Analysis_result
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s5i
hasFile
http://metadb.riken.jp/meta/1.0/hasFile
Relative_ontology_term
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s40i
Tiling_Array_Analysis_Result
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s1i