Other supporting information

Gene Model

Correlation Plot

Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.

Positively Correlated Genes
Gens	PCC	Definition	Overlap gene	Definition	Overlap gene(antisense)	Definition
OMAT5P020180	0.990828	-	AT5G65370	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	-	-
OMAT2P004170	0.990318	-	AT2G22121	LCR35 (Low-molecular-weight cysteine-rich 35)	-	-
OMAT5P005150	0.99	-	AT5G15000	Encodes a ECA1 gametogenesis related family protein	-	-
OMAT1P116830	0.989707	-	AT1G67775	CLE8 (CLAVATA3/ESR-RELATED 8)	-	-
OMAT5P109250	0.989409	-	AT5G39260	ATEXPA21 (ARABIDOPSIS THALIANA EXPANSIN A21)	-	-
OMAT4P006300	0.989263	-	AT4G20800	FAD-binding domain-containing protein	-	-
OMAT4P103450	0.989039	-	AT4G15050	unknown protein	-	-
OMAT5P114430	0.98899	-	AT5G55320	membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related	-	-
OMAT2P000470	0.988396	-	AT2G02498	unknown protein	-	-
OMAT4P108180	0.988287	-	AT4G29280	LCR22 (Low-molecular-weight cysteine-rich 22)	-	-
Negatively Correlated Genes
Gens	PCC	Definition	Overlap gene	Definition	Overlap gene(antisense)	Definition
OMAT4P103410	-0.557772	-	AT4G14900	hydroxyproline-rich glycoprotein family protein	-	-
OMAT2P005910	-0.502915	-	AT2G27050	EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1)	-	-
OMAT1P111590	-0.500975	-	AT1G47860	transposable element gene	-	-
OMAT1P117920	-0.488015	-	AT1G70780,AT1G70782	[AT1G70780]unknown protein, [AT1G70782]CPuORF28 (Conserved peptide upstream open reading frame 28)	-	-
OMAT3P104620	-0.486003	-	AT3G13910	unknown protein	-	-
OMAT1P020990	-0.485036	-	AT1G72630	ELF4-L2 (ELF4-Like 2)	-	-
OMAT4P103060	-0.482057	-	-	-	AT4G13940	MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)
OMAT1P014770	-0.473902	-	AT1G53400	unknown protein	AT1G53410	pre-tRNA
OMAT3P103750	-0.470084	-	AT3G11450	DNAJ heat shock N-terminal domain-containing protein / cell division protein-related	-	-
OMAT1P104440	-0.466124	-	AT1G13750	calcineurin-like phosphoesterase family protein	AT1G13740	AFP2 (ABI FIVE BINDING PROTEIN 2)

Get whole results

Over-Representation Analysis Result

	p-value	<= 1.00e-06	:20 terms with high significance
1.00e-06 <	p-value	<= 8.76e-06	:With considering multiple testing correction; p <= 1.00e-02 / 1142
8.76e-06 <	p-value	<= 1.00e-02

Type of term (*1)	Depth of the term in ontology tree	ID/Term	Description	Number of genes	Over-Representative rate (*2)	p-value (*3)	PosMed p-value (*4) (Link to PosMed)	Found on gene annotation
B	4	GO:0009698	phenylpropanoid metabolic process	10/200	9.78	7.58e-09	-	no
B	5	GO:0006575	cellular amino acid derivative metabolic process	12/200	6.93	2.46e-08	-	no
B	3	GO:0019748	secondary metabolic process	13/200	5.61	1.04e-07	-	no
B	4	GO:0006725	cellular aromatic compound metabolic process	10/200	4.63	1.26e-05	-	no
B	4	GO:0006519	cellular amino acid and derivative metabolic process	12/200	3.45	5.31e-05	-	no
B	4	GO:0005975	carbohydrate metabolic process	13/200	2.50	8.12e-04	-	no
B	4	GO:0044248	cellular catabolic process	10/200	2.77	1.09e-03	-	no
B	3	GO:0009056	catabolic process	12/200	2.52	1.10e-03	-	no
B	5	GO:0051252	regulation of RNA metabolic process	12/200	2.30	2.45e-03	-	no
B	5	GO:0032774	RNA biosynthetic process	12/200	2.19	3.65e-03	-	no

C	3	GO:0012505	endomembrane system	82/200	3.37	1.04e-25	-	no
C	3	GO:0044464	cell part	130/200	1.42	1.34e-08	-	no

M	5	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	10/200	4.04	4.43e-05	-	no
M	4	GO:0016798	hydrolase activity, acting on glycosyl bonds	10/200	3.76	8.30e-05	-	no
M	3	GO:0016787	hydrolase activity	25/200	1.60	7.24e-03	-	no

PS	3	PO:0020092	female gametophyte	11/200	4.06	2.02e-05	-	no

KW	0	endomembrane	-	81/200	3.43	8.66e-26	-	no
KW	0	system	-	81/200	3.34	4.51e-25	-	no
KW	0	globular	-	27/200	7.19	1.47e-16	-	no
KW	0	stage	-	42/200	2.17	4.57e-07	-	no
KW	0	petal	-	31/200	2.12	2.25e-05	-	no
KW	0	expansion	-	31/200	2.11	2.60e-05	-	no
KW	0	glycosyl	-	14/200	3.28	2.85e-05	-	no
KW	0	differentiation	-	31/200	2.05	4.48e-05	-	no
KW	0	inhibitor	-	11/200	3.68	5.27e-05	-	no
KW	0	glycoside	-	10/200	3.80	7.66e-05	-	no
KW	0	ipr001810	-	12/200	2.95	2.49e-04	-	no
KW	0	hydrolase	-	17/200	2.33	4.14e-04	-	no
KW	0	catabolic	-	10/200	3.00	5.71e-04	-	no
KW	0	catalytic	-	21/200	2.07	5.72e-04	-	no
KW	0	process	-	35/200	1.71	5.81e-04	-	no
KW	0	anthesis	-	25/200	1.90	6.91e-04	-	no
KW	0	cyclin	-	12/200	2.57	9.12e-04	-	no
KW	0	encodes	-	40/200	1.57	1.38e-03	-	no
KW	0	carbohydrate	-	10/200	2.55	2.10e-03	-	no
KW	0	biological_process	-	78/200	1.30	2.27e-03	-	yes
KW	0	subgroup	-	10/200	2.46	2.74e-03	-	no
KW	0	molecular_function	-	67/200	1.33	3.45e-03	-	yes
KW	0	function	-	26/200	1.67	3.70e-03	1.00E-43	yes
KW	0	dependent	-	23/200	1.72	4.06e-03	-	no
KW	0	embryo	-	14/200	2.02	4.43e-03	-	no

(*1)	[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [KW]:words found in gene description.
(*2)	([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3)	P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4)	PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.

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