Other supporting information

Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.

Positively Correlated Genes
Gens	PCC	Definition	Overlap gene	Definition	Overlap gene(antisense)	Definition
AT5G32619.1	0.966506	Encodes a defensin-like (DEFL) family protein.	-	-	-	-
AT3G10595.1	0.965891	myb family transcription factor	OMAT3P103410	-	-	-
AT4G29283.1	0.964597	LCR21 (Low-molecular-weight cysteine-rich 21)	-	-	-	-
AT5G23212.1	0.964011	Encodes a defensin-like (DEFL) family protein.	-	-	-	-
AT4G12140.1	0.963715	zinc finger (C3HC4-type RING finger) family protein	-	-	-	-
AT4G29280.1	0.963126	LCR22 (Low-molecular-weight cysteine-rich 22)	OMAT4P108180	-	-	-
AT3G57270.1	0.962933	BG1 (BETA-1,3-GLUCANASE 1)	OMAT3P114110	-	-	-
AT4G13968.1	0.961614	Encodes a defensin-like (DEFL) family protein.	-	-	-	-
AT5G55320.1	0.961118	membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related	OMAT5P114430	-	-	-
AT4G32110.1	0.960357	transferase, transferring glycosyl groups	OMAT4P109130	-	-	-
Negatively Correlated Genes
Gens	PCC	Definition	Overlap gene	Definition	Overlap gene(antisense)	Definition
AT5G01215.1	-0.680421	other RNA	-	-	OMAT5P000060	-
AT3G19184.1	-0.62074	DNA binding	-	-	-	-
AT1G53380.1	-0.595913	unknown protein	OMAT1P113140	-	-	-
AT3G49230.1	-0.595529	unknown protein	-	-	-	-
AT5G40520.2	-0.587938	unknown protein	-	-	-	-
AT4G26488.1	-0.582123	other RNA	-	-	OMAT4P008390	-
AT1G22310.2	-0.575745	MBD8	-	-	-	-
AT5G15340.1	-0.575483	pentatricopeptide (PPR) repeat-containing protein	-	-	-	-
AT1G09860.1	-0.573735	ATPUP16	-	-	-	-
AT4G06674.1	-0.570601	transposable element gene	-	-	-	-

Over-Representation Analysis Result

	p-value	<= 1.00e-06	:20 terms with high significance
1.00e-06 <	p-value	<= 8.76e-06	:With considering multiple testing correction; p <= 1.00e-02 / 1142
8.76e-06 <	p-value	<= 1.00e-02

Type of term (*1)	Depth of the term in ontology tree	ID/Term	Description	Number of genes	Over-Representative rate (*2)	p-value (*3)	PosMed p-value (*4) (Link to PosMed)	Found on gene annotation
C	3	GO:0012505	endomembrane system	119/200	4.90	2.18e-58	-	no
C	3	GO:0044464	cell part	144/200	1.57	1.33e-14	-	no

M	3	GO:0004857	enzyme inhibitor activity	11/200	10.51	7.49e-10	-	no
M	5	GO:0004091	carboxylesterase activity	12/200	5.99	1.33e-07	-	no
M	4	GO:0016788	hydrolase activity, acting on ester bonds	14/200	2.36	1.00e-03	-	no

KW	0	endomembrane	-	118/200	4.99	1.19e-58	-	no
KW	0	system	-	118/200	4.87	1.78e-57	-	no
KW	0	defensin	-	27/200	20.78	4.33e-29	-	no
KW	0	secreted	-	18/200	26.72	2.29e-22	-	no
KW	0	weight	-	15/200	22.27	9.15e-18	-	no
KW	0	encodes	-	71/200	2.78	3.69e-17	-	no
KW	0	cysteine	-	20/200	9.09	9.75e-15	-	no
KW	0	similarity	-	19/200	7.90	5.60e-13	-	no
KW	0	ipr006501	-	11/200	14.87	1.29e-11	-	no
KW	0	pectinesterase	-	12/200	12.79	1.33e-11	-	no
KW	0	small	-	22/200	5.46	2.13e-11	-	no
KW	0	molecular	-	16/200	7.56	5.67e-11	-	no
KW	0	sequence	-	20/200	5.26	3.01e-10	-	no
KW	0	inhibitor	-	16/200	5.35	1.05e-08	-	no
KW	0	pectin	-	11/200	7.26	4.79e-08	-	no
KW	0	modification	-	10/200	5.88	1.31e-06	-	no
KW	0	globular	-	15/200	4.00	1.37e-06	-	no
KW	0	glycosyl	-	15/200	3.52	6.92e-06	-	no
KW	0	enzyme	-	13/200	3.85	8.65e-06	-	no
KW	0	pollen	-	22/200	2.46	3.31e-05	-	no
KW	0	member	-	25/200	2.28	3.99e-05	-	no
KW	0	hydrolase	-	16/200	2.19	1.12e-03	-	no

(*1)	[C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [KW]:words found in gene description.
(*2)	([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3)	P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4)	PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.

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